View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8727_low_4 (Length: 480)
Name: NF8727_low_4
Description: NF8727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8727_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 16 - 420
Target Start/End: Complemental strand, 37218747 - 37218342
Alignment:
| Q |
16 |
aggtattccttttgaaaattacagataaagaaggaaattggagaaactcaatcctttgttgattacctcacatcaagataattgtaaacagatgaatgta |
115 |
Q |
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| T |
37218747 |
aggtattccttttgaaaattacagataaagaaggaaattggagaaactcgatcctttgttgattacctcacatcaagataattgtaaccagatgaatgta |
37218648 |
T |
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| Q |
116 |
ataaatctttggcagcattgacatctaaggtaacaacattttgatcatgactgcaaataatttgatgaccactgcaaatattagagataaattgtagatc |
215 |
Q |
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| T |
37218647 |
ataaatctttggcagcattgacatctaaggtaacaacattttgatcatgactgcaaataatttgatgaccactgcaaatattagagataaattgtagatc |
37218548 |
T |
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| Q |
216 |
cgtatatataacataatatagaatggaatgagatggaatatattttgaactcttactcc-tttgtggtgtccattcttttctttgaagtttagcactctg |
314 |
Q |
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| T |
37218547 |
cgtatatataacataatatagaatggaatgagatggaatatattttgaactcttactccttttgtggtgtccattcttttctttgaagtttagcactccg |
37218448 |
T |
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| Q |
315 |
gaaagttatcaatgcaaaaccattaactgtatgaagggtgtttatgaaatgaaaaataagcttaattggtataggatttttggaggtctctgcagtgttg |
414 |
Q |
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| T |
37218447 |
gaaagttatcaatgcaaaaccattaactgtatgaagggtgtttatgaaatgaaaaataagcttaattggtataggatttttggaggtctctgcagtgttg |
37218348 |
T |
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| Q |
415 |
accttc |
420 |
Q |
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| T |
37218347 |
accttc |
37218342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 5409729 - 5409596
Alignment:
| Q |
27 |
ttgaaaattacagataaagaaggaaattggagaaactcaatcctttgttgattacctcacatcaagataattgtaaacagatgaatgtaataaatctttg |
126 |
Q |
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|||||||||| | || |||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
5409729 |
ttgaaaattaaaaatgaagaaggaaattggagaatctcattcctttgttaattacctcacatcaagataattgtaaccagatgaatgtaatagatctttg |
5409630 |
T |
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| Q |
127 |
gcagcattgacatctaaggtaacaacattttgat |
160 |
Q |
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| T |
5409629 |
gcagcatggacatctaaggtaacaacattttgat |
5409596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 252 - 361
Target Start/End: Complemental strand, 5409520 - 5409411
Alignment:
| Q |
252 |
aatatattttgaactcttactcctttgtggtgtccattcttttctttgaagtttagcactctggaaagttatcaatgcaaaaccattaactgtatgaagg |
351 |
Q |
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| T |
5409520 |
aatatattttaaacacttactcctttgtggtgtccattcttttctttgaagtttagcactccagaaagttatcaatgcaaaatcaataattgtatgaagg |
5409421 |
T |
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| Q |
352 |
gtgtttatga |
361 |
Q |
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|| ||||||| |
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| T |
5409420 |
gtatttatga |
5409411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 67 - 160
Target Start/End: Original strand, 24666663 - 24666756
Alignment:
| Q |
67 |
tcctttgttgattacctcacatcaagataattgtaaacagatgaatgtaataaatctttggcagcattgacatctaaggtaacaacattttgat |
160 |
Q |
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| T |
24666663 |
tcctttgttaattacctcacatcaagataattgtaaccagatgaatctagcagatctttggtagcatggacatctaaggtaacaacatcttgat |
24666756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 439 - 469
Target Start/End: Complemental strand, 37218308 - 37218278
Alignment:
| Q |
439 |
agtgttgacctttttaagtatgtggagtatt |
469 |
Q |
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| T |
37218308 |
agtgttgacctttttaagtatgtggagtatt |
37218278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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