View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8727_low_5 (Length: 473)
Name: NF8727_low_5
Description: NF8727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8727_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 40545321 - 40545779
Alignment:
| Q |
1 |
aggtgaatggtgtcttgatcagattaaagtttacaagaaaagccttattccaatcaaaagaaatttattattctcctatagatagtttaactcatgattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40545321 |
aggtgaatggtgtcttgatcagattaaagtttacaagaaaagccttattccaatcaaaagaaatttattattctcctatagatagttttactcatgattg |
40545420 |
T |
|
| Q |
101 |
tggttattggcattttaccttttatagaaagtggtggtcaattgctaatatcaaaattattatcaagt----gaaagacacttactagttgactaggcca |
196 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||| |
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| T |
40545421 |
tggttattgacattttaccttttatagaaagtggtgatcaattgctaatatcaaaactattatcaagtatttgaaagacactttctagttgactaggcca |
40545520 |
T |
|
| Q |
197 |
tttgctttgctttgcnnnnnnnat--------attcttcattgtagtttccgaatcctgatatgttatcatttggatggataagtgtcagaagttcaata |
288 |
Q |
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|||||||| |||| | || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40545521 |
tttgctttcctttcctttttttatgcatgcatattcttcattgtagtttcagaatcctgatatgttatcatttggatggataagtgtcagaagttcaata |
40545620 |
T |
|
| Q |
289 |
ttaataatacaaagttctttcttttacgtctttatatattgtttgtgcctattaaattctttaaactcgtgaccttgattgatccatgtagtttggtcaa |
388 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40545621 |
ttaata---caaagttctttcttttacgtctttatatattgattgtgcctattaaattctttaaactcgtgaccttga----tccatgtagtttggtcaa |
40545713 |
T |
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| Q |
389 |
atgagtcgcacttatgtgatttggtttcagtaccttgctcttgattagaacctgtgaccagattga |
454 |
Q |
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| T |
40545714 |
atgagtcgcacttatgtgatttggtttcagtaccttgctcttgattagaacctgtgaccagattga |
40545779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 85 - 454
Target Start/End: Original strand, 31789813 - 31790163
Alignment:
| Q |
85 |
gtttaactcatgattgtggttattggcattttaccttttatagaaagtggtg-gtcaattgctaatatcaaaattattatcaagt----gaaagacactt |
179 |
Q |
| |
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|||| |||||||||||||||||||| |||||||||||| ||||| |||| |||| ||||||||||||||||||||||||||| ||||||||| | |
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| T |
31789813 |
gttttactcatgattgtggttattgacattttacctttcgtagaa-gtggcatgtcagttgctaatatcaaaattattatcaagtatttgaaagacacat |
31789911 |
T |
|
| Q |
180 |
actagttgactaggccatttgctttgctttgcnnnnnnn--atattcttcattgtagtttccgaatcctgatatgttatcatttggatggataagtgtca |
277 |
Q |
| |
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|| |||| ||||||| |||||||| |||| ||||||| |||||||||||| |||||| ||||||||||||||||||||||||| ||||| |
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| T |
31789912 |
tcttgttgcctaggccttttgctttccttttttatgcctgcatattctccattgtagtttcagaatccagatatgttatcatttggatggataaatgtca |
31790011 |
T |
|
| Q |
278 |
gaagttcaatattaataatacaaagttctttcttttacgtctttatatattgtttgtgcctattaaattctttaaactcgtgaccttgattgatccatgt |
377 |
Q |
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||||||||||||| ||||||| ||||||||||||||||| |||||||||||||| ||||||||||||| ||||| |
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| T |
31790012 |
taagttcaatatta---atacaaaa-------------------atatattgtttgtgcctgttaaattctttaaattcgtgaccttgat----ccatgc |
31790085 |
T |
|
| Q |
378 |
agtttggtcaaatga-gtcgcacttatgtgatttggtttcagtaccttgctcttgattagaacctgtgaccagattga |
454 |
Q |
| |
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| T |
31790086 |
aatttggttaaatgaagtcacacctatgcaatttggtttcagtaccttgctcttgattagaactcgtgaccagattga |
31790163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 322 - 454
Target Start/End: Original strand, 32033344 - 32033473
Alignment:
| Q |
322 |
atatattgtttgtgcctattaaattctttaaactcgtgaccttgattgatccatgtagtttggtcaaatga-gtcgcacttatgtgatttggtttcagta |
420 |
Q |
| |
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||||||||||||||||| |||||||||||||| ||||||||||||| ||||| | |||||| |||| | ||| ||| |||| |||||||||||||| |
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| T |
32033344 |
atatattgtttgtgcctgttaaattctttaaattcgtgaccttgat----ccatgcaatttggttaaattaagtcacacctatgcaatttggtttcagta |
32033439 |
T |
|
| Q |
421 |
ccttgctcttgattagaacctgtgaccagattga |
454 |
Q |
| |
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||||||||||||||||||| ||||||||||||| |
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| T |
32033440 |
ccttgctcttgattagaactcgtgaccagattga |
32033473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 209
Target Start/End: Original strand, 32033165 - 32033297
Alignment:
| Q |
85 |
gtttaactcatgattgtggttattggcattttaccttttatagaaagtggtg-gtcaattgctaatatcaaaattatt----atcaagt----gaaagac |
175 |
Q |
| |
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|||| |||||||||||||||||||| | |||||||||| ||||| |||| ||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
32033165 |
gttttactcatgattgtggttattgacgttttacctttcgtagaa-gtggcatgtcaattgctaatatcaaaattatttattatcaagtatttgaaagac |
32033263 |
T |
|
| Q |
176 |
acttactagttgactaggccatttgctttgcttt |
209 |
Q |
| |
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|| | ||||||| |||||||||||||||| |||| |
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| T |
32033264 |
acattctagttgcctaggccatttgctttccttt |
32033297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 219 - 367
Target Start/End: Original strand, 5162832 - 5162978
Alignment:
| Q |
219 |
atattcttcattgtagtttccgaatcctgatatgttatcatttggatggataagtgtcagaagttcaatattaataatacaaagttctttctttt-acgt |
317 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||| ||||| | | ||||||||||||||| |||||||||||||||| |||| |
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| T |
5162832 |
atattcttcattgtagtttcagaatcctgatatgttatcatttagatagataaatacctttagttcaatattaata---caaagttctttctttttacgt |
5162928 |
T |
|
| Q |
318 |
ctttatatattgtttgtgcctattaaattctttaaactcgtgaccttgat |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5162929 |
ctttatatattgtttgtgcctattaaattctttaaactcgtgaccttgat |
5162978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 5162668 - 5162717
Alignment:
| Q |
13 |
tcttgatcagattaaagtttacaagaaaagccttattccaatcaaaagaa |
62 |
Q |
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| T |
5162668 |
tcttggtcagattaaagtttacaagaaaagccttcttccaatcaaaagaa |
5162717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 407 - 454
Target Start/End: Original strand, 5162986 - 5163033
Alignment:
| Q |
407 |
atttggtttcagtaccttgctcttgattagaacctgtgaccagattga |
454 |
Q |
| |
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||||| ||||| ||||||||||||||||||||| |||||||||||||| |
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|
| T |
5162986 |
atttgatttcattaccttgctcttgattagaacttgtgaccagattga |
5163033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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