View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8727_low_9 (Length: 308)
Name: NF8727_low_9
Description: NF8727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8727_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 7133443 - 7133724
Alignment:
| Q |
19 |
aagtgagttagttccctatttccagtactatagtgttgtgctactggttgtatttactgctgcctttgacagaagatgttttcacatgatcaaggtgggt |
118 |
Q |
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| T |
7133443 |
aagtgagttagttccctatttccagtactatagtgttgtgctattgattgtatttactgctgcctttgacagaagatgttttcacatgatcaaggtgggt |
7133542 |
T |
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| Q |
119 |
tgagaattgagatgcattcttgttgtgcttgagcaagaatgggtgaattgtatgttgtgtttgatcaaggataggtgtcggatgaacttgtatttctaaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
7133543 |
tgagaattgagatgcattcttgttgtgcttgagcaagaatgggtgaattgtatgttgtgtttgatcaaggataagtgtaggatgaacttgtatttctaaa |
7133642 |
T |
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| Q |
219 |
tgtgatttctattgatgaccctggtattgtacacagtttattatgtattgtatttgtgtactatagtgcattgaagaataat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7133643 |
tgtgatttctattgatgaccctggtattgtacacagtttattatgtattgtatttgtgtactatagtgctttgaagaataat |
7133724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 7128118 - 7128222
Alignment:
| Q |
19 |
aagtgagttagttccctatttccagtactatagtgttgtgctactggttgtatttactgctgcctttgacagaagatgttttcacatgatcaaggtgggt |
118 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| | |||||||||||| |
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| T |
7128118 |
aagtgagctagttccctatttccaatactatagtgttgtgctactggttgtatttattgctgcctttgaaagaagatgttttcacttcatcaaggtgggt |
7128217 |
T |
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| Q |
119 |
tgaga |
123 |
Q |
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| T |
7128218 |
tgaga |
7128222 |
T |
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