View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8728_high_11 (Length: 224)
Name: NF8728_high_11
Description: NF8728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8728_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 45394402 - 45394211
Alignment:
| Q |
14 |
agaaagaagaacatggggcgccagaagattgagatcaagaaggttgagaaagattccaacaaacttgtcactttctcaaaaagaagacaaggtttattca |
113 |
Q |
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| T |
45394402 |
agaaagaagaacatggggcgccagaagattgagatcaagaaggttgagaaagattccaacaaacttgtcactttctcaaaaagaagacaaggtttattca |
45394303 |
T |
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| Q |
114 |
gaaaagcaagcgaactttgtgtcttatgtgatgttcatgcagccatcattgtgttttcccctggtgacaaactctactgttttggtcaaccc |
205 |
Q |
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| T |
45394302 |
gaaaagcaagcgaactttgtgtcttatgtgatgttcatgcagccatcattgtgttttcccctggtgacaaactctactgttttgggcaaccc |
45394211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 52741013 - 52740822
Alignment:
| Q |
14 |
agaaagaagaacatggggcgccagaagattgagatcaagaaggttgagaaagattccaacaaacttgtcactttctcaaaaagaagacaaggtttattca |
113 |
Q |
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| T |
52741013 |
agaaagaagaacatgggacgcaagaagattgagatcaagaaggttgagaaagaatcacagaaacaagtgactttctcaaaaagaagacaaggtttattca |
52740914 |
T |
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| Q |
114 |
gaaaagcaagcgaactttgtgtcttatgtgatgttcatgcagccatcattgtgttttcccctggtgacaaactctactgttttggtcaaccc |
205 |
Q |
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| T |
52740913 |
gaaaagcaagcgaactttgtgtcttatgtgatgttcatgcagccatcattgtgttttctcctggtgacaaactattttgttttggccaaccc |
52740822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 36 - 174
Target Start/End: Complemental strand, 13539594 - 13539456
Alignment:
| Q |
36 |
agaagattgagatcaagaaggttgagaaagattccaacaaacttgtcactttctcaaaaagaagacaaggtttattcagaaaagcaagcgaactttgtgt |
135 |
Q |
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| T |
13539594 |
agaagatcgagatcaagaagattgacaaagcatcgaacagacaagtcacattctcaaagcgaagacaaggtctattcaaaaaagcaagtgaactttgtgt |
13539495 |
T |
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| Q |
136 |
cttatgtgatgttcatgcagccatcattgtgttttcccc |
174 |
Q |
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| T |
13539494 |
cttatgtgacgcacatgtagccatggtggtgttttcccc |
13539456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 204
Target Start/End: Original strand, 35781972 - 35782138
Alignment:
| Q |
38 |
aagattgagatcaagaaggttgagaaagattccaacaaacttgtcactttctcaaaaagaagacaaggtttattcagaaaagcaagcgaactttgtgtct |
137 |
Q |
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| T |
35781972 |
aagattgagatcaaaaagcttgaaaaagaaaccaacaagcaagtcactttctcaaaaagaagacaaggtttattccgaaaagcgagtgaactttgcactt |
35782071 |
T |
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| Q |
138 |
tatgtgatgttcatgcagccatcattgtgttttcccctggtgacaaactctactgttttggtcaacc |
204 |
Q |
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| T |
35782072 |
tatgtgatgttcatgcagccatcatcgtgttttctcctgctggcaaactacactgtttcggtgaacc |
35782138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 36 - 174
Target Start/End: Complemental strand, 9668570 - 9668432
Alignment:
| Q |
36 |
agaagattgagatcaagaaggttgagaaagattccaacaaacttgtcactttctcaaaaagaagacaaggtttattcagaaaagcaagcgaactttgtgt |
135 |
Q |
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||||||| |||||||||||| |||| |||| || |||| || ||||| |||||||| ||||||||||| |||||| ||||||||| ||||||||||| |
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| T |
9668570 |
agaagatcgagatcaagaagattgacaaagcatcgaacagacaagtcacattctcaaagcgaagacaaggtctattcaaaaaagcaagtgaactttgtgt |
9668471 |
T |
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| Q |
136 |
cttatgtgatgttcatgcagccatcattgtgttttcccc |
174 |
Q |
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| T |
9668470 |
cttatgtgacgcacatgtagccatggtggtgttttcccc |
9668432 |
T |
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