View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8728_high_6 (Length: 345)
Name: NF8728_high_6
Description: NF8728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8728_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 32397183 - 32396973
Alignment:
| Q |
1 |
gaagcttatgagattggtgaatgtagaatctctaaagatgaaacttggtatggatggaaaagaagttatttcttataatgaacttattgaagcttgtgag |
100 |
Q |
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| T |
32397183 |
gaagcttatgagattggtgaatgtggaatctctaaagatgaaacttggtatggatggaaaagaagttatttcttataatgaacttattgaagcttgtgag |
32397084 |
T |
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| Q |
101 |
agtatgggtgttgctaggaattctgaagaggctgctgcatatgctaaggttcttgatgaagctggtgttattcttctcttcagggataaggtctatcttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32397083 |
agtatgggtgttgctaggaattctgaagaggctgctgcatatgctaaggttcttgatgaagctggtgttattcttctcttcagggataaggtctatcttc |
32396984 |
T |
|
| Q |
201 |
atcctgataag |
211 |
Q |
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||||||||||| |
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| T |
32396983 |
atcctgataag |
32396973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 287 - 334
Target Start/End: Complemental strand, 32396897 - 32396850
Alignment:
| Q |
287 |
aagttaggtataatatatctggatatataacttcaataagttagtata |
334 |
Q |
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| T |
32396897 |
aagttaggtataatatatctggatacataacttcaataagttagtata |
32396850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 28537562 - 28537352
Alignment:
| Q |
1 |
gaagcttatgagattggtgaatgtagaatctctaaagatgaaacttggtatggatggaaaagaagttatttcttataatgaacttattgaagcttgtgag |
100 |
Q |
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|||||||||||||||||||||||| ||| | || |||||| |||||||||||| || |||||| ||||||| ||| ||||||| || |||||||| || |
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| T |
28537562 |
gaagcttatgagattggtgaatgttgaaacacttaagatggaacttggtatgggagggaaagaaattatttcctattttgaacttcttcaagcttgtcag |
28537463 |
T |
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| Q |
101 |
agtatgggtgttgctaggaattctgaagaggctgctgcatatgctaaggttcttgatgaagctggtgttattcttctcttcagggataaggtctatcttc |
200 |
Q |
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|||| ||| ||||||||||| || |||||||| || |||||||||||||||||| ||||| ||| |||| || || ||||||||||| ||||| | |
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| T |
28537462 |
agtagtggtattgctaggaatcaagatgaggctgcaaaatttgctaaggttcttgatgatgctggggttgttctactatttagggataaggtttatctgc |
28537363 |
T |
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| Q |
201 |
atcctgataag |
211 |
Q |
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||||||||||| |
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| T |
28537362 |
atcctgataag |
28537352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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