View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8728_low_1 (Length: 545)
Name: NF8728_low_1
Description: NF8728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8728_low_1 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 80 - 545
Target Start/End: Complemental strand, 2820161 - 2819696
Alignment:
| Q |
80 |
tgtgactgtatcatatactaacacatgtcaaacatcagacacaccgtcaatctgaattgtcgacacatcagcagcaccaccccatccttgaggacaaaat |
179 |
Q |
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| T |
2820161 |
tgtgactgtatcatacactaacacatgtcaaacatcagatacaccgtcaatctgaattgtcgacacatcagcagcaccaccccatccttgaggacaaaat |
2820062 |
T |
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| Q |
180 |
gtgattatgtattctaaggatccgcaactcacaagtggagtagaagtgtcaaaagcatagctaaaataattaggacaagcatccttaaatattttcgagt |
279 |
Q |
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| T |
2820061 |
gtgattatgtattctaaggatccgcaactcacaagtggagtaggagtgtcaaaagcatagctaaaataattaggacaagcatccttaaatattttcgagt |
2819962 |
T |
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| Q |
280 |
aagcatttggcctacacttcttaggacttccataatcattcctacaacaaaaattgtcaagatcaaaagccaaacaggcacttgtgcaagccacaacttc |
379 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2819961 |
aaacatttggcctacacttcttaggacttccataatcattcctacaacaaaaattgtcaagatcaaaagccaaacaggcacttttgcaagccacaacttc |
2819862 |
T |
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| Q |
380 |
tccattagaattcaaaacctcaagctcacgaggacacaaacttttaacatccttaaaacaaccttgaatgttacacttcgaatttatgttcttgctaggg |
479 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
2819861 |
tccattagaattcaaaacctcaagctcacgaggacacaaacttttaacatccttaaaacaaccctgaatgttacacttcgaatttatgttcttgttaggg |
2819762 |
T |
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| Q |
480 |
acgacgacggacacgggaatgttgtaaccgtcaacaagactaacatcatagaaatttggtttccct |
545 |
Q |
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| T |
2819761 |
acgacgacggacacgggaatgttgtaaccgtcaacaagactaacatcatagaaatttggtctccct |
2819696 |
T |
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