View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8728_low_10 (Length: 280)

Name: NF8728_low_10
Description: NF8728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8728_low_10
NF8728_low_10
[»] chr5 (2 HSPs)
chr5 (1-280)||(28532162-28532439)
chr5 (3-48)||(29021373-29021418)
[»] chr6 (4 HSPs)
chr6 (3-277)||(6588705-6588974)
chr6 (221-279)||(6416418-6416476)
chr6 (225-276)||(8913659-8913710)
chr6 (221-279)||(6594189-6594247)
[»] chr4 (6 HSPs)
chr4 (1-279)||(21833758-21834028)
chr4 (12-121)||(53761248-53761357)
chr4 (7-42)||(1601088-1601123)
chr4 (82-177)||(3438105-3438200)
chr4 (71-152)||(547490-547571)
chr4 (82-179)||(55908183-55908280)
[»] chr3 (2 HSPs)
chr3 (1-177)||(51763820-51763996)
chr3 (221-279)||(13470321-13470379)
[»] chr1 (1 HSPs)
chr1 (1-172)||(19467879-19468050)
[»] chr7 (4 HSPs)
chr7 (221-279)||(10615045-10615103)
chr7 (1-178)||(10169510-10169687)
chr7 (1-178)||(10177035-10177212)
chr7 (1-109)||(10615207-10615315)


Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 28532439 - 28532162
Alignment:
Q  1 ttattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaaggggaggtct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532439 ttattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaaggggaggtct 28532340  T
Q  101 tcctttgacaaagcttgtcctaaaaaattgctggggctatagttatgatggactcttttgtttgttatccaattgt---cgtcaaggtttccgacatttg 197  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||   |||||||||||||||||||||    
T  28532339 tcctttgataaagcttgtcctaaaaaatcgctggggctatagttatgacggactcttttgtttgttatccaagtgtcgacgtcaaggtttccgacatttg 28532240  T
Q  198 tatattatattggacttagtaaatttctgaatgatcaacatgttatccagttgtcttcgtttcttggtgatttgatgtccatc 280  Q
         ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532239 -----tatattggacttagtaagtttctgaatgatcaacatgttatccagttgtcttcgtttcttggtgatttgatgtccatc 28532162  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 29021418 - 29021373
Alignment:
Q  3 attgactcattggtgagtttcaagggtttgacttgtcttggtttgt 48  Q
    |||||||  |||||||||||||||||||| |||||||||| |||||    
T  29021418 attgacttgttggtgagtttcaagggtttaacttgtcttgatttgt 29021373  T

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Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 3 - 277
Target Start/End: Original strand, 6588705 - 6588974
Alignment:
Q  3 attgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaaggggaggtcttc 102  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||| |  ||| ||||| || |||||||||||||||||||||||||||  | ||||||    
T  6588705 attgactcattggtgagtttgaagagtttgacttgtcttggtttgtctgctttgaatatctccgatgagttgctctacactattgcaaggaaacgtcttc 6588804  T
Q  103 ctttgacaaagcttgtcctaaaaaattgctggggctatagttatgatggactcttttgtttgttatccaattgtcgtcaaggtttccgacatttgtatat 202  Q
    |||||||||  ||||| || ||| |||| |  |||  |  |||| |||||||||||| |||||||||||  |||| | || |||||| |||||||         
T  6588805 ctttgacaagacttgtactcaaatattgttctggccgttattataatggactcttttatttgttatccatgtgtcataaaagtttccaacatttg----- 6588899  T
Q  203 tatattggacttagtaaatttctgaatgatcaacatgttatccagttgtcttcgtttcttggtgatttgatgtcc 277  Q
     || ||| |  || ||  ||||||||||||||||||||| || | |||||||| ||||||||||||||| |||||    
T  6588900 gatcttgaagataataggtttctgaatgatcaacatgttgtcgaattgtcttcctttcttggtgatttggtgtcc 6588974  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 6416476 - 6416418
Alignment:
Q  221 tttctgaatgatcaacatgttatccagttgtcttcgtttcttggtgatttgatgtccat 279  Q
    ||||| ||||||||||||||| |||| |||||| |||||||| ||| ||||||||||||    
T  6416476 tttcttaatgatcaacatgttgtccaattgtctccgtttcttagtggtttgatgtccat 6416418  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 276
Target Start/End: Original strand, 8913659 - 8913710
Alignment:
Q  225 tgaatgatcaacatgttatccagttgtcttcgtttcttggtgatttgatgtc 276  Q
    ||||||||||||||||| || ||||||||| |||||||||| ||||| ||||    
T  8913659 tgaatgatcaacatgttgtcaagttgtctttgtttcttggtaatttggtgtc 8913710  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 279
Target Start/End: Original strand, 6594189 - 6594247
Alignment:
Q  221 tttctgaatgatcaacatgttatccagttgtcttcgtttcttggtgatttgatgtccat 279  Q
    |||||||||||||||||||||  | ||||||||| |||||||| || ||||| ||||||    
T  6594189 tttctgaatgatcaacatgttgccgagttgtctttgtttcttgctggtttgaagtccat 6594247  T

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Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 21833758 - 21834028
Alignment:
Q  1 ttattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaaggggaggtct 100  Q
    |||||| |||||| |||||||| |||||||||||||||||| |||||  || |||  |||| |  |||||||| |||||| |||||||||||| ||||||    
T  21833758 ttattggctcattagtgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatcttggatgagttactctactctattgcaagggaaggtct 21833857  T
Q  101 tcctttgacaaagcttgtcctaaaaaattgctggggctatagttatgatggactcttttgtttgttatccaattgtcgtcaaggtttccgacatttgtat 200  Q
    |||||| || | |||||||||   ||| |||   |||||||||||||||||| |||||||||||||||||||     |||| ||| ||| |||||||       
T  21833858 tcctttaacgaggcttgtccttcgaaaatgcaccggctatagttatgatggaatcttttgtttgttatccaa---aggtcatggtgtccaacatttg--- 21833951  T
Q  201 attatattggacttagtaaatttctgaatgatcaacatgttatccagttgtcttcgtttcttggtgatttgatgtccat 279  Q
       || ||| |  ||  |  ||||||||||||||||||||| ||||||||| ||| ||||||||||||||||| |||||    
T  21833952 --gatcttgaagataacatgtttctgaatgatcaacatgttgtccagttgtattcatttcttggtgatttgatttccat 21834028  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 53761248 - 53761357
Alignment:
Q  12 ttggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaaggggaggtcttcctttgacaa 111  Q
    ||||||||||| ||||||||||||| ||||  |||| |  ||||    ||||| ||| ||||||||||| ||||||||| || | |||||||||||||||    
T  53761248 ttggtgagtttgaagggtttgacttctcttaatttgcagcatttaggaatttcagataagttgctctactctattgcaaaggaatgtcttcctttgacaa 53761347  T
Q  112 agcttgtcct 121  Q
      ||||||||    
T  53761348 gtcttgtcct 53761357  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 1601123 - 1601088
Alignment:
Q  7 actcattggtgagtttcaagggtttgacttgtcttg 42  Q
    |||||||||||||||| |||||||||||||||||||    
T  1601123 actcattggtgagtttgaagggtttgacttgtcttg 1601088  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 177
Target Start/End: Original strand, 3438105 - 3438200
Alignment:
Q  82 ctattgcaaggggaggtcttcctttgacaaagcttgtcctaaaaaattgctggggctatagttatgatggactcttttgtttgttatccaattgtc 177  Q
    |||||||||  |||||||||||||||| || |||||||||  | ||||||   ||||||||||||| || | |||||| | |||||||||| ||||    
T  3438105 ctattgcaattggaggtcttcctttgagaaggcttgtcctccacaattgcaccggctatagttatgctgaaatcttttctctgttatccaagtgtc 3438200  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 547571 - 547490
Alignment:
Q  71 gttgctctacactattgcaaggggaggtcttcctttgacaaagcttgtcctaaaaaattgctggggctatagttatgatgga 152  Q
    |||||||| | ||||||||| || || | ||||||||| ||||||||||||  ||||||| |  ||||||||||||| ||||    
T  547571 gttgctctcctctattgcaatggaagctattcctttgagaaagcttgtcctccaaaattgtttcggctatagttatgctgga 547490  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 179
Target Start/End: Original strand, 55908183 - 55908280
Alignment:
Q  82 ctattgcaaggggaggtcttcctttgacaaagcttgtcctaaaaaattgctggggctatagttatgatggactcttttgtttgttatccaattgtcgt 179  Q
    ||||||||| ||||||||||||||||| ||  ||||||||  ||||||||   ||||||| ||||| |||| | |  | |||||||||||| ||||||    
T  55908183 ctattgcaatgggaggtcttcctttgagaagacttgtcctccaaaattgcaccggctataattatgttggaatatactctttgttatccaagtgtcgt 55908280  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 51763820 - 51763996
Alignment:
Q  1 ttattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaaggggaggtct 100  Q
    ||||||| || ||||||||||| ||||||||||||| ||||| |||| |   ||| || || |||||||||||||||||| | |||||||||| ||||||    
T  51763820 ttattgattcgttggtgagtttgaagggtttgacttctcttgatttgaagcgtttgaaaatctctgatgagttgctctactcgattgcaagggaaggtct 51763919  T
Q  101 tcctttgacaaagcttgtcctaaaaaattgctggggctatagttatgatggactcttttgtttgttatccaattgtc 177  Q
    || ||||| || |||||||||  ||| ||||  |||||||||||||| |||| || |||||||| ||||||| ||||    
T  51763920 tcttttgaaaaggcttgtccttcaaatttgcacgggctatagttatgctggaatcatttgtttggtatccaactgtc 51763996  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 279
Target Start/End: Original strand, 13470321 - 13470379
Alignment:
Q  221 tttctgaatgatcaacatgttatccagttgtcttcgtttcttggtgatttgatgtccat 279  Q
    ||||||||||||||||||||| |||| ||||||||||||||| ||| ||||||||||||    
T  13470321 tttctgaatgatcaacatgttctccaattgtcttcgtttcttagtggtttgatgtccat 13470379  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 19467879 - 19468050
Alignment:
Q  1 ttattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaaggggaggtct 100  Q
    |||||||||||||| ||||||| ||||||||||||| ||||  || ||  | | | ||||| ||||||||  |||||||| |||||||| ||| ||| ||    
T  19467879 ttattgactcattgctgagtttgaagggtttgacttctcttacttggtggtttctgaatatctctgatgaaatgctctactctattgcacgggaagggct 19467978  T
Q  101 tcctttgacaaagcttgtcctaaaaaattgctggggctatagttatgatggactcttttgtttgttatccaa 172  Q
     |||||||| | ||||||||| ||| ||||||  ||| |||| |||| |||| |||||||||||||||||||    
T  19467979 acctttgacgaggcttgtcctcaaatattgctttggccatagctatgctggaatcttttgtttgttatccaa 19468050  T

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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 10615103 - 10615045
Alignment:
Q  221 tttctgaatgatcaacatgttatccagttgtcttcgtttcttggtgatttgatgtccat 279  Q
    ||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||    
T  10615103 tttctgaatgatcaacatgttgtccaattgtcttcatttcttggtgatttgatgtccat 10615045  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 10169510 - 10169687
Alignment:
Q  1 ttattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaaggggaggtct 100  Q
    ||||||||||  |||||||||| ||||||||||||| ||||  ||||   | | |  |||| ||||||||  |||||||| ||||||| |||| ||||||    
T  10169510 ttattgactcgctggtgagtttgaagggtttgacttctctttctttgagatctctggatatctctgatgaaatgctctactctattgcgagggaaggtct 10169609  T
Q  101 tcctttgacaaagcttgtcctaaaaaattgctggggctatagttatgatggactcttttgtttgttatccaattgtcg 178  Q
     |||||||| | ||||| ||| | | |||||| || ||| || |||| |||| |||||||||||| ||| || |||||    
T  10169610 acctttgacgaggcttgccctcagatattgcttggactaaagctatgctggaatcttttgtttgtcatctaagtgtcg 10169687  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 10177035 - 10177212
Alignment:
Q  1 ttattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaaggggaggtct 100  Q
    ||||||||||  |||||||||| ||||||||||||| ||||  ||||   | | |  |||| ||||||||  |||||||| ||||||| |||| ||||||    
T  10177035 ttattgactcgctggtgagtttgaagggtttgacttctctttctttgagatctctggatatctctgatgaaatgctctactctattgcgagggaaggtct 10177134  T
Q  101 tcctttgacaaagcttgtcctaaaaaattgctggggctatagttatgatggactcttttgtttgttatccaattgtcg 178  Q
     |||||||| | ||||| ||| | | |||||| || ||| || |||| |||| |||||||||||| ||| || |||||    
T  10177135 acctttgacgaggcttgccctcagatattgcttggactaaagctatgctggaatcttttgtttgtcatctaagtgtcg 10177212  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 10615315 - 10615207
Alignment:
Q  1 ttattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaaggggaggtct 100  Q
    |||||||||||||||||||||| ||||| ||||||||||||| |||| | | | | ||||| ||  || | ||| | ||| ||||||||||||  |||||    
T  10615315 ttattgactcattggtgagtttgaagggcttgacttgtcttgatttgcagtttatgaatatctcaaataacttgttttactctattgcaagggtgggtct 10615216  T
Q  101 tcctttgac 109  Q
    |||||||||    
T  10615215 tcctttgac 10615207  T

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