View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8728_low_11 (Length: 253)
Name: NF8728_low_11
Description: NF8728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8728_low_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 52 - 253
Target Start/End: Original strand, 12415925 - 12416126
Alignment:
| Q |
52 |
gatgatgatgtatgaagttcaatgttgatcatataataactaaccagacataagggcgaggaagagctgcaagatgaacaccaaagccatataagcattt |
151 |
Q |
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| T |
12415925 |
gatgatgatgtatgaagttcaatgttgatcatataataactaaccagacataagggtgaggaagagttgcaagatgaacaccaaagccatataagcattt |
12416024 |
T |
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| Q |
152 |
gggtggagatagttcatagtgactaaatccatgtttcatcattgttgatagttcctctttagaacaagcaaaccacgcataccgaacattagcatcccct |
251 |
Q |
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| T |
12416025 |
gggtggagatagttcatagtgactaaatccatgttccatcattgttgatagttcctctttagaagaagcaaaccacgcataccgaacattagcatcccct |
12416124 |
T |
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| Q |
252 |
tt |
253 |
Q |
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|| |
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| T |
12416125 |
tt |
12416126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 53 - 251
Target Start/End: Original strand, 3129147 - 3129345
Alignment:
| Q |
53 |
atgatgatgtatgaagttcaatgttgatcatataataactaaccagacataagggcgaggaagagctgcaagatgaacaccaaagccatataagcatttg |
152 |
Q |
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| T |
3129147 |
atgataatgtatgaagttcaacgtagatcatatgataactaaccagacgaaagggtgggtaatagctgcaagatgaacaccagggccatatatgcatttg |
3129246 |
T |
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| Q |
153 |
ggtggagatagttcatagtgactaaatccatgtttcatcattgttgatagttcctctttagaacaagcaaaccacgcataccgaacattagcatcccct |
251 |
Q |
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| T |
3129247 |
gatggagataattcatagtgactaagttcatattccatcattgttgatatttcctctttggaacaagcaagccatgcataacgaatattagcaacccct |
3129345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 59 - 246
Target Start/End: Original strand, 22394560 - 22394746
Alignment:
| Q |
59 |
atgtatgaagttcaatgttgatcatataataactaaccagacataagggcgaggaagagctgcaagatgaacaccaaagccatataagcatttgggtgga |
158 |
Q |
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|||| |||||||||||| ||||||| | | |||||||||||||| |||| | ||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
22394560 |
atgtctgaagttcaatgctgatcatgtgaaaactaaccagacatgagggtcggtaagagctgcaaaatgaacaccaaagccatataagcatttggaggga |
22394659 |
T |
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| Q |
159 |
gatagttcatagtgactaaatccatgtttcatcattgttgatagttcctctttagaacaagcaaaccacgcataccgaacattagcat |
246 |
Q |
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| T |
22394660 |
ggtaatcaatagtgactaaatccatgtttcattattgttaacaattcctctttagaacaagcaaa-catgcatatcggacattagcat |
22394746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 62 - 250
Target Start/End: Original strand, 3164761 - 3164949
Alignment:
| Q |
62 |
tatgaagttcaatgttgatcatataataactaaccagacataagggcgaggaagagctgcaagatgaacaccaaagccatataagcatttgggtggagat |
161 |
Q |
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| T |
3164761 |
tatgaagttcattattgatcatatgataactaaccagacattagggtgggtagcagctataagatgaacggcaaagccatatatgcatttggatggagat |
3164860 |
T |
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| Q |
162 |
agttcatagtgactaaatccatgtttcatcattgttgatagttcctctttagaacaagcaaaccacgcataccgaacattagcatcccc |
250 |
Q |
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| T |
3164861 |
agttcatagtgaccaggcccatattccaccattgttgacaattcctctttagaacaagaaagccacacataacgaacattggcgtcccc |
3164949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 250
Target Start/End: Original strand, 38209783 - 38209975
Alignment:
| Q |
59 |
atgtatgaagttcaatgttgat-catataataactaaccagacataagggcgaggaagagctgcaagatgaacaccaaagccatataagcatttgggtgg |
157 |
Q |
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||||||||| |||||||| || ||||| | ||||||||| ||||||| || | | || |||||||||||||| ||| ||||||| ||| ||| |
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| T |
38209783 |
atgtatgaatctcaatgttcattcatatgaaaactaaccatgcataaggacgggtcacagttgcaagatgaacacgaaatccatatatattattgaatgg |
38209882 |
T |
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| Q |
158 |
agatagttcatagtgactaaatccatgtttcatcattgttgatagttcctctttagaacaagcaaaccacgcataccgaacattagcatcccc |
250 |
Q |
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| T |
38209883 |
agataattcatagcgacgaagtccatattccatcattttttacagttcatctttagaacaagcaatccacgcatagcgaacattggcttcccc |
38209975 |
T |
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