View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8728_low_12 (Length: 250)
Name: NF8728_low_12
Description: NF8728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8728_low_12 |
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| [»] chr5 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 12416354 - 12416116
Alignment:
| Q |
12 |
aatactgttgtagatattaagcaagagccagatgtaaatttagatgcttatactgaatatgcttttggaaatctgaatgtggattctgtacgaaggatgt |
111 |
Q |
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| T |
12416354 |
aatactgttgtagatattaagcaagagccagatgtaaatttagatgcttatactgaatatgcttttgaaaatctggatgtggattctgtacaaaggatgt |
12416255 |
T |
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| Q |
112 |
ttcttacaggaatggcttttttgggctttatcgagtctgacatagttgaggtttaccgcaactcaggaaagtcaatgcaaatgcgccttgatttattcaa |
211 |
Q |
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| T |
12416254 |
ttcttacaggaatgacttttttgggctttatcgagtctgacatagttgaggtttaccgcaactcaggaaagtcaatgcaaatacgccttgatttattcaa |
12416155 |
T |
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| Q |
212 |
gatgcaagttgatattacaaaagaagttaaaggggatgc |
250 |
Q |
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| T |
12416154 |
gatgcaagttgatattacaaaagaagttaaaggggatgc |
12416116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 22394981 - 22394743
Alignment:
| Q |
12 |
aatactgttgtagatattaagcaagagccagatgtaaatttagatgcttatactgaatatgcttttggaaatctgaatgtggattctgtacgaaggatgt |
111 |
Q |
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| T |
22394981 |
aatattgttgtagctattaagcaagagccagatgtaaatttagatgcttatactgaatatgcttctggaaaccagtatgtggactctgtacaaaggatgt |
22394882 |
T |
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| Q |
112 |
ttcttacaggaatggcttttttgggctttatcgagtctgacatagttgaggtttaccgcaactcaggaaagtcaatgcaaatgcgccttgatttattcaa |
211 |
Q |
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| T |
22394881 |
gtcttacaggaatggctgctttgggtattaccgagtctaacatagttgagatttactgcaactcgggaaagttaatgcaaacacgacttgatttatttaa |
22394782 |
T |
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| Q |
212 |
gatgcaagttgatattacaaaagaagttaaaggggatgc |
250 |
Q |
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| T |
22394781 |
gatgcaagttgatattacaaaagaaattaaggggaatgc |
22394743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 196
Target Start/End: Complemental strand, 3129565 - 3129391
Alignment:
| Q |
22 |
tagatattaagcaagagccagatgtaaatttagatgcttatactgaatatgcttttggaaatctgaatgtggattctgtacgaaggatgtttcttacagg |
121 |
Q |
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| T |
3129565 |
tagatattaaccaagagccagacatagatttaaatgattattctgaatctttatacggaaaattggatgtgaattctacacaaaagatgtttcttaaagg |
3129466 |
T |
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| Q |
122 |
aatggcttttttgggctttatcgagtctgacatagttgaggtttaccgcaactcaggaaagtcaatgcaaatgcg |
196 |
Q |
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| T |
3129465 |
aatgagttctttgggaattagcgagtctgatatagttgggatttatcgcagctcaggaaggtcaatgcaaatgcg |
3129391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 176
Target Start/End: Complemental strand, 38210192 - 38210042
Alignment:
| Q |
26 |
tattaagcaagagccagatgtaaatttagatgcttatactgaatatgcttttggaaatctgaatgtggattctgtacgaaggatgtttcttacaggaatg |
125 |
Q |
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| T |
38210192 |
tattaagcaatagttagatgtagatttagatgtttacactgaatatatatatggaaaactgaatgtggattatgtacaggagatgtttcttataggaatg |
38210093 |
T |
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| Q |
126 |
gcttttttgggctttatcgagtctgacatagttgaggtttaccgcaactca |
176 |
Q |
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| T |
38210092 |
actattttgggcattaccgagtctgacattgttgatatttactgcaactca |
38210042 |
T |
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