View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8728_low_13 (Length: 249)
Name: NF8728_low_13
Description: NF8728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8728_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 6497138 - 6496923
Alignment:
| Q |
20 |
tttggaacctgcatttcatatggatagcagaaaccttcaagatatgaaatcatggggtcatagttcagctcaagaatcagtcaatgggtcttcaaataca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6497138 |
tttggaacctgcatttcatatggatagcagaaaccttcaagatatgaaatcatggggtcatagttcagctcaagaatcagtcaatgggtcttcaaataca |
6497039 |
T |
|
| Q |
120 |
gagctgtatcctcggtagttgttggattaatttcagtcatattcatgtaa-atacatgagcatgtttcatcttcatgtatgtaacacataaagatatagt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6497038 |
gagctgtatcctcggtagttgttggattaatttcagtcatattcatgtaatatacatgagcatgtttcatcttcatgtatgtaacacataaagatatagt |
6496939 |
T |
|
| Q |
219 |
catcaattgagtatta |
234 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
6496938 |
catcaattgagtatta |
6496923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 133
Target Start/End: Complemental strand, 6514461 - 6514384
Alignment:
| Q |
56 |
tcaagatatgaaatcatggggtcatagttcagctcaagaatcagtcaatgggtcttcaaatacagagctgtatcctcg |
133 |
Q |
| |
|
||||||||||||||| | ||||||||||| ||||||||||||||||||||| ||||||||||| |||| | |||||| |
|
|
| T |
6514461 |
tcaagatatgaaatcgtcaggtcatagttctgctcaagaatcagtcaatggggcttcaaatacacagctatttcctcg |
6514384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University