View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8728_low_15 (Length: 209)
Name: NF8728_low_15
Description: NF8728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8728_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 51 - 181
Target Start/End: Complemental strand, 8521368 - 8521238
Alignment:
| Q |
51 |
ataacaatgactttgaagtcaatctacatgtacaaccacaactttttagccaatgtaatgttgaaagattcaaaaaagtcagtattcgtaatggatgagc |
150 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
8521368 |
ataacaatgactttaaagtcaatctacatgtacaaccacagctttttagccaatgtaacgttgaaagattcaaaaaagtcggtattcgtaatggatgaac |
8521269 |
T |
|
| Q |
151 |
aaaaaatgaatgatgcttgttagaataatct |
181 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
8521268 |
caaaaatgaatgatgcttgttagaatgatct |
8521238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 51 - 176
Target Start/End: Complemental strand, 8511780 - 8511655
Alignment:
| Q |
51 |
ataacaatgactttgaagtcaatctacatgtacaaccacaactttttagccaatgtaatgttgaaagattcaaaaaagtcagtat-tcgtaatggatgag |
149 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||| || ||| ||| |||||||||||| |
|
|
| T |
8511780 |
ataacaatgactttcaagtcaatgtacatgtacgaccacaactttttagccaatgtaatgttgaaagatt-aaagaaatcattataatgtaatggatgag |
8511682 |
T |
|
| Q |
150 |
caaaaaatgaatgatgcttgttagaat |
176 |
Q |
| |
|
|||||||||||||| || | ||||||| |
|
|
| T |
8511681 |
caaaaaatgaatgaagcatattagaat |
8511655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 12251103 - 12251036
Alignment:
| Q |
51 |
ataacaatgactttgaagtcaatctacatgtacaaccacaactttttagccaatgtaatgttgaaaga |
118 |
Q |
| |
|
|||||||||| ||| |||||| | |||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
12251103 |
ataacaatgattttaaagtcattgtacatgtacaaccacaactttttagccaatgtcatgttcaaaga |
12251036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 32673251 - 32673311
Alignment:
| Q |
76 |
acatgtacaaccacaactttttagccaatgtaatgttgaaagattcaaaaaagtcagtatt |
136 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||| ||||| ||| |||||||| |||| |
|
|
| T |
32673251 |
acatgtacaaccacaattttttagttaatgtaatgtcaaaagaatcataaaagtcattatt |
32673311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University