View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8728_low_2 (Length: 437)
Name: NF8728_low_2
Description: NF8728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8728_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 149 - 353
Target Start/End: Complemental strand, 7090031 - 7089827
Alignment:
| Q |
149 |
cagagtcaatgggctaatttacctcccgagttactattagacataattcaaagggtggaagctagtgaaacctcttggccatctcgccgcgcacttgtag |
248 |
Q |
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| T |
7090031 |
cagagtcaatgggctaatttacctcccgagttactattagacataattcaaagggtggaagctagtgaaacctcttggccatctcgccgtgcacttgtag |
7089932 |
T |
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| Q |
249 |
cttgtgcctcagtttgtagattatggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccctatatcactgaagca |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7089931 |
cttgtgcctcagtttgtagattatggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccctatatcactgaagca |
7089832 |
T |
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| Q |
349 |
ggtaa |
353 |
Q |
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||||| |
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| T |
7089831 |
ggtaa |
7089827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 149 - 353
Target Start/End: Complemental strand, 7669857 - 7669653
Alignment:
| Q |
149 |
cagagtcaatgggctaatttacctcccgagttactattagacataattcaaagggtggaagctagtgaaacctcttggccatctcgccgcgcacttgtag |
248 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
7669857 |
cagagtcaatgggctaacttacctcctgagttactattagacataattcaaagggtggaagctagtgaaaccacttggccatctctccgcgcacttgtag |
7669758 |
T |
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| Q |
249 |
cttgtgcctcagtttgtagattatggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccctatatcactgaagca |
348 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7669757 |
cttgtgcctcagtttgtagattgtggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccctatatcattgaagca |
7669658 |
T |
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| Q |
349 |
ggtaa |
353 |
Q |
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||||| |
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| T |
7669657 |
ggtaa |
7669653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 7090185 - 7090070
Alignment:
| Q |
1 |
gggaattggcaacatgtatagaagaggtgtagaaactaagcatatgcatagacatggaaaatctcacatagcaccagaatgttcttcaccaatttcacta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7090185 |
gggaattggcaacatgtatagaagaggtgtagaaactaagcatatgcatagacatggaaaatctcacatagcaccagaatgttcttcaccaatatcacta |
7090086 |
T |
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| Q |
101 |
tcagtaccaacaacac |
116 |
Q |
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| T |
7090085 |
tcagtaccaacaacac |
7090070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 7670003 - 7669888
Alignment:
| Q |
1 |
gggaattggcaacatgtatagaagaggtgtagaaactaagcatatgcatagacatggaaaatctcacatagcaccagaatgttcttcaccaatttcacta |
100 |
Q |
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|||||||||||||||||||| ||||| ||||||||| || |||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
7670003 |
gggaattggcaacatgtatataagagatgtagaaaccaaacatacacatagacatggaaaatctcacatagcaccagaatgttcctcaccaatatcacta |
7669904 |
T |
|
| Q |
101 |
tcagtaccaacaacac |
116 |
Q |
| |
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|||| ||||||||||| |
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| T |
7669903 |
tcagcaccaacaacac |
7669888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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