View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8728_low_3 (Length: 413)
Name: NF8728_low_3
Description: NF8728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8728_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 108 - 295
Target Start/End: Original strand, 27056116 - 27056304
Alignment:
| Q |
108 |
gcctcaacatgtcggatacc-tttgtagcgtttgtcaatttccactctctaaatttgttgtctctcccaatcttgccaagctcgaccaacatttggcctc |
206 |
Q |
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| T |
27056116 |
gcctcaacatgtcggataccctttgtagcgtttgtcaatttccactctctaaatttgttgtctctcccaatcttgccaagcttgaccaacatttggcctc |
27056215 |
T |
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| Q |
207 |
atgcaaagcattaattacaattgattagaagatctggagatgcattttacttttatttgttgatgttttcaagatctagaaaataaatc |
295 |
Q |
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| T |
27056216 |
atgcaaagcattaattacaattgattagaagatctggagatgcattttacttttatttgttgatgttttcgagatccagaaaataaatc |
27056304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 360
Target Start/End: Original strand, 27056336 - 27056368
Alignment:
| Q |
328 |
tactaagaacttcattatattctctgaattaat |
360 |
Q |
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| T |
27056336 |
tactaagaacttcattatattctctgaattaat |
27056368 |
T |
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