View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8728_low_4 (Length: 381)
Name: NF8728_low_4
Description: NF8728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8728_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 93 - 357
Target Start/End: Original strand, 27781648 - 27781910
Alignment:
| Q |
93 |
tagtagtggcagtaactaaaaggaatgattagtacaatcattaattaatttgtaaaatcaccatgtattatcatatatcaaaattcatctgtgcatcaaa |
192 |
Q |
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| T |
27781648 |
tagtagtggcagtaactaaaaggaatgattagtacgatgattaattaatttgtaaaatcaccatgtattaccatatatcaaaattcatctg--catcaaa |
27781745 |
T |
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| Q |
193 |
ataactttctggtatggtatccctggctttcaagacggcaaaactaaagtgaatggagaagaagaaaggaaaattaaaccatcatcgctagtccttgatg |
292 |
Q |
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| T |
27781746 |
ataactttctggtatggtatccctggctttcaagacggcaaaactaaagtgaatggagaagaagaaaggaaaattaaaccatcatcgctagtccttgatg |
27781845 |
T |
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| Q |
293 |
tagacttcaccactgaaagttccaaacaaaaaatagtgatgctaatggtaagataaatcctttac |
357 |
Q |
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| T |
27781846 |
tagacttcaccactgaaagttccaaacaaaaaatagtgatgctaatggtaagataaatcctttac |
27781910 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 24414446 - 24414402
Alignment:
| Q |
50 |
atactttccgctttgtgatctgttaagcgattttgatgactaata |
94 |
Q |
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| T |
24414446 |
atactttcccctttgtgatctgttaagtggttttgatgactaata |
24414402 |
T |
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