View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8728_low_5 (Length: 371)
Name: NF8728_low_5
Description: NF8728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8728_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 24855491 - 24855841
Alignment:
| Q |
1 |
ttctcactttttcatttcatttaatttatcctttaaggcatttaagaaggcatggaatgaagcatgttctaatgggtatgtccttgtggtacccaaaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24855491 |
ttctcactttttcatttcatttaatttatcctttaaggcatttaagaaggcatggaatgaagcatgttctaaagggtatgtccttgtggtacccaaaaat |
24855590 |
T |
|
| Q |
101 |
aggatatatcgtctcaagccaataactttttcaggtccatgtcaaccaaatactgcctttatggtgagtcttacactataagaattctctttattaggga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24855591 |
aggatatatcgtctcaagccaataactttttcaggtccatgtcaaccaaatactgcctttatggtgagtcttacactataagaattctctttattaggga |
24855690 |
T |
|
| Q |
201 |
tcaatttaaaattccattactgaattatttagaccctcggtaattaatgacggtctaaaccctcagaaatgcaacaaaaaccatcaataacattggtgac |
300 |
Q |
| |
|
|||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
24855691 |
tcaa-ttaaaatttcattactaaattatttagaccctcggtaattaatgacggtctaaaccctcagaaatgcaacaaaaaccctcaataacattgctgac |
24855789 |
T |
|
| Q |
301 |
ggaataaatcctcaataattcagttaattaagttacagatggataaatccgc |
352 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
24855790 |
gaaataaatcctcaataattcagataattaagttaatgatggataaatccgc |
24855841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 174 - 330
Target Start/End: Complemental strand, 27410187 - 27410030
Alignment:
| Q |
174 |
cactataagaattctctttattagggatcaatttaaaattccattactgaattatttagaccctcggtaattaatgacggtctaaaccctcagaaatgca |
273 |
Q |
| |
|
||||| |||||||| ||||||||| || ||| |||||||| |||||||| || ||||||||| ||||||| || | |||||||||||||| |||| | |
|
|
| T |
27410187 |
cactacaagaattccctttattagtgaccaacttaaaattgaattactgagggatctagaccctcagtaattactggcagtctaaaccctcagtaatgta |
27410088 |
T |
|
| Q |
274 |
aca-aaaaccatcaataacattggtgacggaataaatcctcaataattcagttaatta |
330 |
Q |
| |
|
| | |||||| ||||||||||| |||||||||||| |||||||||||||||| |||| |
|
|
| T |
27410087 |
atagaaaaccctcaataacattactgacggaataaaccctcaataattcagttgatta |
27410030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 174 - 351
Target Start/End: Original strand, 31978535 - 31978713
Alignment:
| Q |
174 |
cactataagaattctctttattagggatcaatttaaaattccattactgaattatttagaccctcggtaattaatgacggtctaaaccctcagaaatgca |
273 |
Q |
| |
|
||||| |||||||| ||||||||| || ||| |||||||| |||||||| || ||||||||| ||||||| || | |||||||||||||| |||| | |
|
|
| T |
31978535 |
cactacaagaattccctttattagtgaccaacttaaaattgaattactgagggatctagaccctcagtaattactggcagtctaaaccctcagtaatgta |
31978634 |
T |
|
| Q |
274 |
aca-aaaaccatcaataacattggtgacggaataaatcctcaataattcagttaattaagttacagatggataaatccg |
351 |
Q |
| |
|
| | |||||| ||||||||||| |||||||||||| |||||||||||||||| |||| |||| || ||||||||||| |
|
|
| T |
31978635 |
atagaaaaccctcaataacattactgacggaataaaccctcaataattcagttgattacattactgacggataaatccg |
31978713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 173 - 350
Target Start/End: Complemental strand, 29915795 - 29915617
Alignment:
| Q |
173 |
acactataagaattctctttattagggatcaatttaaaattccattactgaattatttagaccctcggtaattaatgacggtctaaaccctcagaaatgc |
272 |
Q |
| |
|
|||||| |||||||| ||||||||| || ||| |||||||| |||||||| || ||||||||| ||||||| || | |||||||||||||| |||| |
|
|
| T |
29915795 |
acactacaagaattccctttattagtgaccaacttaaaattgaattactgagggatctagaccctcagtaattactggcagtctaaaccctcagtaatgt |
29915696 |
T |
|
| Q |
273 |
aaca-aaaaccatcaataacattggtgacggaataaatcctcaataattcagttaattaagttacagatggataaatcc |
350 |
Q |
| |
|
|| | |||||| ||||||||||| |||||||||||| ||||||||||| |||| |||| |||| || |||||||||| |
|
|
| T |
29915695 |
aatagaaaaccctcaataacattactgacggaataaaccctcaataatttagttgattacattactgacggataaatcc |
29915617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 9671260 - 9671380
Alignment:
| Q |
36 |
aggcatttaagaaggcatggaatgaagcatgttctaatgggtatgtccttgtggtacccaaaaataggatatatcgtctcaagccaataactttttcagg |
135 |
Q |
| |
|
|||||||| | | |||||||||||| ||||||||||||||| | || ||||||||||| ||| | || | |||| ||| || || ||||| |||||||| |
|
|
| T |
9671260 |
aggcatttgaaatggcatggaatgaggcatgttctaatgggaaggttcttgtggtacctaaacaaagtgtctatcatctaaatcctataacattttcagg |
9671359 |
T |
|
| Q |
136 |
tccatgtcaaccaaatactgc |
156 |
Q |
| |
|
||||| ||||| |||||||| |
|
|
| T |
9671360 |
gccatgccaacccaatactgc |
9671380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 323
Target Start/End: Original strand, 22014061 - 22014124
Alignment:
| Q |
260 |
ccctcagaaatgcaacaaaaaccatcaataacattggtgacggaataaatcctcaataattcag |
323 |
Q |
| |
|
||||||| |||||| ||||||| ||||||||||| ||||||||||||| |||||||| ||||| |
|
|
| T |
22014061 |
ccctcagtaatgcacaaaaaaccctcaataacattagtgacggaataaaccctcaatatttcag |
22014124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 6731822 - 6731766
Alignment:
| Q |
208 |
aaaattccattactgaattatttagaccctcggtaattaatgacggtctaaaccctc |
264 |
Q |
| |
|
|||||| ||||||||| |||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
6731822 |
aaaattacattactgacggatttagaccctcagtaattactgacggtctaaaccctc |
6731766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 322
Target Start/End: Original strand, 32089871 - 32089986
Alignment:
| Q |
208 |
aaaattccattactgaattatttagaccctcggtaattaatgacggtctaaaccctcagaaatgcaacaaaaa-ccatcaataacattggtgacggaata |
306 |
Q |
| |
|
|||||| ||||||||| ||||||| |||| || |||| |||||| || |||||||| ||| || ||||| || ||||||||||| |||||||||| |
|
|
| T |
32089871 |
aaaattgcattactgagggatttagatcctcagtgattactgacggagtacaccctcagtaattaaaaaaaaaaccctcaataacattattgacggaata |
32089970 |
T |
|
| Q |
307 |
aatcctcaataattca |
322 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
32089971 |
aatcctcaatatttca |
32089986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University