View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8728_low_6 (Length: 370)
Name: NF8728_low_6
Description: NF8728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8728_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 96 - 258
Target Start/End: Original strand, 24769001 - 24769162
Alignment:
| Q |
96 |
aatggataattgaaagaatttcctgaagacaggagtttatttaaagaaatagaagtaatgaagggataaaatagtatttttcatttcagtaaacacagca |
195 |
Q |
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| T |
24769001 |
aatggataattgaaagaatctcttgaagacaggagtttatttaaagaaatagaagtaatgaagggataaaatagtatttatcatttca-taaacacagga |
24769099 |
T |
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| Q |
196 |
caaaactttgtccactgctttagcgccgtacaagaaaagaggaagttgtccagtgcatgcttc |
258 |
Q |
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| T |
24769100 |
caaaactttgtccactgctttagcgccgtacaagaaaagaggaagttgtctagtgcatgcttc |
24769162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 24768238 - 24768300
Alignment:
| Q |
9 |
gacatcataagcatcatgaaaccaaggaaggaaaagtgacacacacaaagtagggaaggaacg |
71 |
Q |
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| T |
24768238 |
gacatcataagcatcatgaaaccaaggaaggaaaagtgacacacacaaagtagggaaggaacg |
24768300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 298 - 350
Target Start/End: Original strand, 10240707 - 10240759
Alignment:
| Q |
298 |
taaaactcccgtccatctcctagtaatatgcactttgggtagttgtttctttg |
350 |
Q |
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| T |
10240707 |
taaaactccagtccatctcctagtaatatgtactttgggtagttgtttctttg |
10240759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 139 - 253
Target Start/End: Original strand, 38673948 - 38674062
Alignment:
| Q |
139 |
aagaaatagaagtaatgaagggataaaatagtatttttcatttcagtaaacacagcacaaaactttgtccactgctttagcgccgtacaagaaaagagga |
238 |
Q |
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| T |
38673948 |
aagaaatagaagcaatgaagggataaattagtcttttttgtataagtgaacaagggacaatactttgtccactggtttggcgcggtacaaaataataggt |
38674047 |
T |
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| Q |
239 |
agttgtccagtgcat |
253 |
Q |
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| T |
38674048 |
agttgtccagtgcat |
38674062 |
T |
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