View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8728_low_7 (Length: 349)
Name: NF8728_low_7
Description: NF8728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8728_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 31998725 - 31998393
Alignment:
| Q |
1 |
ttaccacaatttctagcaattcctacaaaactatgagcaactctattgttacatctcttaacataaattaaactaacattagacatactgaacaacaatt |
100 |
Q |
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| T |
31998725 |
ttaccacaatttctagcaattcctacaaaactatgagcaactctattgttacatcacttaacataaattaaactaacattagacatactgaacaacaatt |
31998626 |
T |
|
| Q |
101 |
catgacagtcagacacgacaatatccttgtactccagcttagttttcccaagcacgcagttcacaaacatttggcatattttgtgtagacatccaccgga |
200 |
Q |
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| T |
31998625 |
catgacagtcaaacacgacaatatccttgtactccagcttagttttcccaagcacgcagttcacaaacatttggcatattttgtgtagacatccaccgga |
31998526 |
T |
|
| Q |
201 |
gacaccaacgcagtcccataatgtccggcaaagctggagcctttgtcacatctccctctttgttgcagctgcagaaagcatcccttcatgattccacgct |
300 |
Q |
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| T |
31998525 |
gacaccaacgcagtcccataatgtccggcaaaactggagcctttgtcacatctccctctttgttgcagctgcagaaagcatcccttcatgattccacgct |
31998426 |
T |
|
| Q |
301 |
ttcaaccccagcaagtgaaatgatcctcaaaac |
333 |
Q |
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| T |
31998425 |
ttcaaccccagcaagtgaaatgatcctcaaaac |
31998393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 42613200 - 42613096
Alignment:
| Q |
2 |
taccacaatttctagcaattcctacaaaactatgagcaactctattgttacatctcttaacataaattaaactaacattagacatactgaacaacaattc |
101 |
Q |
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||||||| ||||||||||||||||| || | ||||||| ||||| |||||||||||||| || |||||||||||||||||||||||| | |||||| |
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| T |
42613200 |
taccacagtttctagcaattcctaccaacc-atgagcagctctactgttacatctctta----aacataaactaacattagacatactgaatatcaattc |
42613106 |
T |
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| Q |
102 |
atgacagtca |
111 |
Q |
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| | |||||| |
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| T |
42613105 |
aagtcagtca |
42613096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 333
Target Start/End: Complemental strand, 42612936 - 42612854
Alignment:
| Q |
252 |
ctccctctttgttgcagctgcagaaagcatcccttcatgattccacgctttcaa-ccccagcaagtgaaatgatcctcaaaac |
333 |
Q |
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|||||||||||||||||||||||||| || ||||||||| |||| | | |||| ||||| ||||||||||| |||||||||| |
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| T |
42612936 |
ctccctctttgttgcagctgcagaaaccaacccttcatggttcctcacaatcaatccccaacaagtgaaatgttcctcaaaac |
42612854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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