View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8729_high_3 (Length: 337)
Name: NF8729_high_3
Description: NF8729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8729_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 23508077 - 23508398
Alignment:
| Q |
1 |
caataaaattaaagattatatactatttcagtcaaaataacagttttaatagttgtattaagctagttttatcatcacaaatccgtttgtaatggtaaaa |
100 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23508077 |
caataaaattaaagattatatactattttattcaaaataacagttttaatagttgtattaagctagttttatcatcacaaatccgtttgtaatggtaaaa |
23508176 |
T |
|
| Q |
101 |
gtttattaattgaaacaaaataagccgtcaacctattctaacatttcattcttccttttactctnnnnnnntttcatccttcacttttattcaaacagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
23508177 |
gtttattaattgaaacaaaataagccgtcaacctattctaacatttcattcttccttttactctcaaaaattttcatccttcacttttattcaaacagat |
23508276 |
T |
|
| Q |
201 |
attcttcatatgtaattcnnnnnnnnnnnnnnngaaaaaatttggtgtggtcacaccaagttttgtggtggatctgtccatgagtgacgtatgaactagg |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| ||| |
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| T |
23508277 |
attcttcatatgtaattc-ttttttacttttttgaaaaaatttggtgtggtcacaccaagctttgtggtggatctgtccatgaatgaagtatgaacaagg |
23508375 |
T |
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| Q |
301 |
atcataagaaaaatgacaaacat |
323 |
Q |
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||||||||||||||||||||||| |
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| T |
23508376 |
atcataagaaaaatgacaaacat |
23508398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 37575573 - 37575620
Alignment:
| Q |
103 |
ttattaattgaaacaaaataagccgtcaacctattctaacatttcatt |
150 |
Q |
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| T |
37575573 |
ttattaattgaaacaaaataagccaccaacttcttctaacatttcatt |
37575620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 3162326 - 3162280
Alignment:
| Q |
1 |
caataaaattaaagattatatactatttcagtcaaaataacagtttt |
47 |
Q |
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||||||||| ||||||||| |||||||||| ||||||||||||||| |
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| T |
3162326 |
caataaaatcaaagattatgtactatttcacccaaaataacagtttt |
3162280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 47350489 - 47350549
Alignment:
| Q |
1 |
caataaaattaaagattatatactatttcagtcaaaataacagttttaatagttgtattaa |
61 |
Q |
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||||||||||||| ||||| || ||||||| |||||||| ||||||| ||||| |||||| |
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| T |
47350489 |
caataaaattaaatattatgtaatatttcacccaaaataatagttttagtagttttattaa |
47350549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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