View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8729_low_1 (Length: 648)
Name: NF8729_low_1
Description: NF8729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8729_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 592; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 11 - 630
Target Start/End: Original strand, 6863669 - 6864288
Alignment:
| Q |
11 |
attatactacataagaaatccaaataatttaggccaaattaaaaaagaaaaggattcataccttcaattttccatcaagaagaccatcaagggccatgaa |
110 |
Q |
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| T |
6863669 |
attatactacataagaaatgcaaataatttaggccaaattaaaaaagaaaaggattcataccttcaattttccatcaagaagaccatcaagggccatgaa |
6863768 |
T |
|
| Q |
111 |
ctgagcaacatgagaaccaaatcctcctattgatccttcttccacagtgatcaaaacctcgtgtgatttggctaggctgcgaatgagcgaatggtccaac |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6863769 |
ctgagcaacatgagaaccaaatcctcctattgatccttcttccacagtgatcaaaacctcgtgtgatttggctaggctgcgaatgagtgaatggtccaac |
6863868 |
T |
|
| Q |
211 |
ggcttgcagaaacgtgcatccaccaccgttacacgcaagccatgatcctccagcatggaggctgcagctacacagttctgaacagctgttccaaaaccca |
310 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6863869 |
ggcttgcagaaacgtgcatccgccaccgttacacgcaagccatgatcctccagcatggaggctgcagctacacagttctgaacagctgttccaaaaccca |
6863968 |
T |
|
| Q |
311 |
aaagtgccactctttccccttcaatcagtatcctaccttttccaatctgttaatatgtcataacattaaatgttcgcttcatttgccaaaactgtttaaa |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6863969 |
aaagtgccactctttccccttcaatcagtatcctaccttttccaatctgttaatgtgtcataacattaaatgttcacttcatttgccaaaactgtttaaa |
6864068 |
T |
|
| Q |
411 |
gagaaatgctagcaatagacaatctaacacagttatttagtggaatccaagtgaatttattctaatattagataaaggattcgtgttaaaaatgacgtgt |
510 |
Q |
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| T |
6864069 |
gagaaatgctagcaatacacaatctaacatagttatttagtggaatccaagtgaatttattctaatattagataaaggattcgtgttaaaaatgacgtgt |
6864168 |
T |
|
| Q |
511 |
taagagaatatgttgctaacaataacaattctttttaatcatattcataagggcataactgtgaagtataaatgtgactataattctaactcacctccat |
610 |
Q |
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| T |
6864169 |
taagagaatatgttgctaacaataacaattctttttaatcatattcataagggcataactgtgaagtataaatgtgactataattctaactcacctccat |
6864268 |
T |
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| Q |
611 |
aggaatgcctctattccctg |
630 |
Q |
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|||||||||||||||||||| |
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| T |
6864269 |
aggaatgcctctattccctg |
6864288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 4e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 69 - 375
Target Start/End: Complemental strand, 49148769 - 49148463
Alignment:
| Q |
69 |
taccttcaattttccatcaagaagaccatcaagggccatgaactgagcaacatgagaaccaaatcctcctattgatccttcttccacagtgatcaaaacc |
168 |
Q |
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||||||||| |||||||| | || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||| |||| |
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| T |
49148769 |
taccttcaaatttccatctaagaggccatcaagggccatgaactgagcaacatgagaaccaaatcctccaattgatccttcttctacggtgatcagaacc |
49148670 |
T |
|
| Q |
169 |
tcgtgtgatttggctaggctgcgaatgagcgaatggtccaacggcttgcagaaacgtgcatccaccaccgttacacgcaagccatgatcctccagcatgg |
268 |
Q |
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| T |
49148669 |
tcgtgtgatttggccagactgcgaatcaaggatcgatccaatggcttgcagaaacgtgcatcagcaacggttaagcgcaagccatgttgttcaactaagg |
49148570 |
T |
|
| Q |
269 |
aggctgcagctacacagttctgaacagctgttccaaaacccaaaagtgccactctttccccttcaatcagtatcctaccttttccaatctgttaatatgt |
368 |
Q |
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| || || || | |||||||||||| |||| ||| | ||||| || || ||||||||||||||||| |||||||||||||| |||||||||||| || | |
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| T |
49148569 |
aagccgcggccaaacagttctgaacggctgatccgtagcccaatagggctactctttccccttcaattagtatcctacctttcccaatctgttaaaatat |
49148470 |
T |
|
| Q |
369 |
cataaca |
375 |
Q |
| |
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||||||| |
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|
| T |
49148469 |
cataaca |
49148463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 49712655 - 49712716
Alignment:
| Q |
88 |
agaagaccatcaagggccatgaactgagcaacatgagaaccaaatcctcctattgatccttc |
149 |
Q |
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||||| |||||||| || || || ||||||||||| |||||||||||||| || |||||||| |
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| T |
49712655 |
agaagtccatcaagagcaataaattgagcaacatgggaaccaaatcctccaatagatccttc |
49712716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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