View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8729_low_10 (Length: 248)
Name: NF8729_low_10
Description: NF8729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8729_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 39299865 - 39300079
Alignment:
| Q |
19 |
caactttggttgatttttgcctgtgacgaaggaagagatataaaattagataggtgaaacaaagaagttaattttgt-tttagtaatgttagaatgaaac |
117 |
Q |
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| T |
39299865 |
caactttggttgatttttgcctgtgacgaaggaagagatataaaattagataggtgaaacaaagaagttaattttgtatttagtaatgttagaatgaaac |
39299964 |
T |
|
| Q |
118 |
agatgatcatatactttcaaagtgagcagatagattgtgaaaggttagaaatgctgcttttatgtttttaagcgttggtttggtgcggatcccataaatt |
217 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39299965 |
agatgatcatatacttttaaagtgagcagatagattgtgaaaggttagaaatgctgcttttatgtttttaagcgttggtttggcgcggatcccataaatt |
39300064 |
T |
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| Q |
218 |
ggatacctgaacaca |
232 |
Q |
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||||||||||||||| |
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| T |
39300065 |
ggatacctgaacaca |
39300079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 39307695 - 39307799
Alignment:
| Q |
19 |
caactttggttgatttttgcctgtgacgaaggaagagatataaaattagataggtgaaacaaagaagttaattttgt-tttagtaatgttagaatgaaac |
117 |
Q |
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||||||| ||||||||| |||||| ||||||||||||||||||||| |||||||||| ||||| |||||| ||| ||| |||||||| ||| |||| |
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| T |
39307695 |
caactttaattgatttttagctgtgagaaaggaagagatataaaattagctaggtgaaac-aagaacttaattatgtatttggtaatgttggaacgaaag |
39307793 |
T |
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| Q |
118 |
agatga |
123 |
Q |
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|||||| |
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| T |
39307794 |
agatga |
39307799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 26563563 - 26563604
Alignment:
| Q |
23 |
tttggttgatttttgcctgtgacgaaggaagagatataaaat |
64 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||| |
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| T |
26563563 |
tttggttgatttttgcctgtgagaaaggtagagatataaaat |
26563604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 26555713 - 26555761
Alignment:
| Q |
146 |
gatagattgtgaaaggttagaaatgctgcttttatgtttttaagcgttg |
194 |
Q |
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|||||||| | |||||| ||||||||||| |||| |||||||||||||| |
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| T |
26555713 |
gatagattattaaaggtgagaaatgctgcatttaagtttttaagcgttg |
26555761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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