View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8729_low_12 (Length: 204)

Name: NF8729_low_12
Description: NF8729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8729_low_12
NF8729_low_12
[»] chr8 (5 HSPs)
chr8 (1-138)||(14227349-14227486)
chr8 (1-108)||(14223143-14223250)
chr8 (1-105)||(14229661-14229765)
chr8 (135-204)||(14227183-14227252)
chr8 (167-204)||(2648277-2648314)
[»] chr1 (1 HSPs)
chr1 (167-204)||(3921660-3921697)
[»] chr6 (3 HSPs)
chr6 (161-204)||(4859142-4859185)
chr6 (161-204)||(15443682-15443725)
chr6 (172-204)||(29711260-29711292)
[»] chr5 (1 HSPs)
chr5 (161-198)||(41600885-41600922)
[»] chr4 (2 HSPs)
chr4 (158-198)||(4072997-4073037)
chr4 (160-200)||(39272116-39272156)


Alignment Details
Target: chr8 (Bit Score: 130; Significance: 1e-67; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 14227349 - 14227486
Alignment:
Q  1 tgatgattgctgggtgcctttcacttgacttacttctttattaagacaatgtgtctttgtagtttgattcttgaggtttaggttttcttagatcacactt 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14227349 tgatgattgctggatgcctttcacttgacttacttctttattaagacaatgtgtctttgtagtttgattcttgaggtttaggttttcttagatcacactt 14227448  T
Q  101 tgattgccggtaagtgtttttgatggctgaaggccaaa 138  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  14227449 tgattgccgataagtgtttttgatggctgaaggccaaa 14227486  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 14223143 - 14223250
Alignment:
Q  1 tgatgattgctgggtgcctttcacttgacttacttctttattaagacaatgtgtctttgtagtttgattcttgaggtttaggttttcttagatcacactt 100  Q
    ||||||||| ||| ||||||||| ||||||| || |||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  14223143 tgatgattgttggatgcctttcatttgactttctcctttatcaggacaatgtgtctttgtagtttgattcttgaggtctaggttttcttagatcacaatt 14223242  T
Q  101 tgattgcc 108  Q
    ||||||||    
T  14223243 tgattgcc 14223250  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 14229661 - 14229765
Alignment:
Q  1 tgatgattgctgggtgcctttcacttgacttacttctttattaagacaatgtgtctttgtagtttgattcttgaggtttaggttttcttagatcacactt 100  Q
    ||||| ||| |||||  |||||||||||||| || |||||||| ||||||||||||||||||||||||||| |||||||||||||  || |||||| |||    
T  14229661 tgatggttgttgggtatctttcacttgactttctcctttattaggacaatgtgtctttgtagtttgattctcgaggtttaggtttgttttgatcactctt 14229760  T
Q  101 tgatt 105  Q
    |||||    
T  14229761 tgatt 14229765  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 14227183 - 14227252
Alignment:
Q  135 caaacatgacacagacacgggaaaggacactaacacgtcaacatcaataataatttgagaaaatgacata 204  Q
    |||||||||||||||||| ||| | | |||| ||||||||||| |||||||||||||||||||| |||||    
T  14227183 caaacatgacacagacactggacacgtcactgacacgtcaacaccaataataatttgagaaaataacata 14227252  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 2648314 - 2648277
Alignment:
Q  167 acacgtcaacatcaataataatttgagaaaatgacata 204  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  2648314 acacgtcaacaccaataataatttgagaaaataacata 2648277  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 3921660 - 3921697
Alignment:
Q  167 acacgtcaacatcaataataatttgagaaaatgacata 204  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3921660 acacgtcaacatcaataataatttgagaaaatgacata 3921697  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 4859185 - 4859142
Alignment:
Q  161 acactaacacgtcaacatcaataataatttgagaaaatgacata 204  Q
    ||||||||| ||| ||| ||||||||||||||||||||||||||    
T  4859185 acactaacatgtcgacaccaataataatttgagaaaatgacata 4859142  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 15443682 - 15443725
Alignment:
Q  161 acactaacacgtcaacatcaataataatttgagaaaatgacata 204  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||    
T  15443682 acactgacacgtcgacatcaataataatttgagaaaataacata 15443725  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 29711260 - 29711292
Alignment:
Q  172 tcaacatcaataataatttgagaaaatgacata 204  Q
    |||||||| ||||||||||||||||||||||||    
T  29711260 tcaacatcgataataatttgagaaaatgacata 29711292  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 41600885 - 41600922
Alignment:
Q  161 acactaacacgtcaacatcaataataatttgagaaaat 198  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  41600885 acactaacacgtcaacattgataataatttgagaaaat 41600922  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 4072997 - 4073037
Alignment:
Q  158 aggacactaacacgtcaacatcaataataatttgagaaaat 198  Q
    |||||||| |||||||||||||||| ||||||||| |||||    
T  4072997 aggacactcacacgtcaacatcaatgataatttgaaaaaat 4073037  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 39272156 - 39272116
Alignment:
Q  160 gacactaacacgtcaacatcaataataatttgagaaaatga 200  Q
    |||||||||| ||||||| ||||||||||| ||||||||||    
T  39272156 gacactaacatgtcaacaccaataataattcgagaaaatga 39272116  T

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