View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8729_low_3 (Length: 578)
Name: NF8729_low_3
Description: NF8729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8729_low_3 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 14 - 556
Target Start/End: Original strand, 47854489 - 47855027
Alignment:
| Q |
14 |
atcaatagttatatactagaaactgaaacttaaaatttaagtggagattttaccttaactttggagataaacctaacaaaactcttacgagaacagattt |
113 |
Q |
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| T |
47854489 |
atcaatagttatatactagaaactgaaacttaaaatttaagtggagattataccttaactttggagataaccctaacaaaactcttacgagaacagattt |
47854588 |
T |
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| Q |
114 |
taggaacaagattcaactatgggtcgatttagagaaatcatttgatgcgtacagaaggaacataaattgggtgaaaaatgaactggagaaggaataggtc |
213 |
Q |
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| T |
47854589 |
taggaacaagattcaactatgggtcgatttagagaaatcatttgatgcgtacagaaggaacataaattgggtgaaaaatgaactggagaaggaataggtc |
47854688 |
T |
|
| Q |
214 |
gatttt-gaactcacagaaaggaagatgaaatgagacagtgaaaatacaaatcctgcactgcactgcacatacgttcaagttcaaa-caa-acatacaga |
310 |
Q |
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| T |
47854689 |
gatttttgaactcagagaaaggaagatgaaacgagacagtgaaaatacaaatcctgcactgcacg-----tacgttcaagttcaactcaagacatacaga |
47854783 |
T |
|
| Q |
311 |
actcttggattaagggcaaattgggaaattcagggggcataaaagatttttgggtatttaccaaataaaagaagcacggcccatattccagaattatttt |
410 |
Q |
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| T |
47854784 |
actcttggattaagggcaaattgggaaattcagggggcataaaagatttttgggta-ttaccaaataaaaaaagcacggcccatattccagaattatttt |
47854882 |
T |
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| Q |
411 |
ccttttccttcactcattagaagagtatataaacaccattctccataaccaaaaacacgattatcaaaatcgtaatcgataacccaa-cgctataaccgt |
509 |
Q |
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| T |
47854883 |
cc-tttccttcactcattagaagagtatataaacaccattctccataaccaaaaacacgattatc-aaatcgtaatcgataacccaaccgctataaccgt |
47854980 |
T |
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| Q |
510 |
aaacccttcacaattaccatatcgaaatcgctaaaaccctaaaccct |
556 |
Q |
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| T |
47854981 |
aaacccttcacaattaccatatcgaaatctctaaaaccctaaaccct |
47855027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 14 - 556
Target Start/End: Complemental strand, 47719594 - 47719056
Alignment:
| Q |
14 |
atcaatagttatatactagaaactgaaacttaaaatttaagtggagattttaccttaactttggagataaacctaacaaaactcttacgagaacagattt |
113 |
Q |
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| T |
47719594 |
atcaatagttatatactagaaactgaaacttaaaatttaagtggagattttaccttaactttggagataaccctaacaaaactcttacgagaacagattt |
47719495 |
T |
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| Q |
114 |
taggaacaagattcaactatgggtcgatttagagaaatcatttgatgcgtacagaaggaacataaattgggtgaaaaatgaactggagaaggaataggtc |
213 |
Q |
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| T |
47719494 |
taggaacaagattcaacaataggtcgacttagagaaatcatttgatgcgtacagaaggaacataaattgggtgaaaaatgaactggagaaggaataggtc |
47719395 |
T |
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| Q |
214 |
gatttt-gaactcacagaaaggaagatgaaatgagacagtgaaaatacaaatcctgcactgcactgcacatacgttcaagttcaaa-caa-acatacaga |
310 |
Q |
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| T |
47719394 |
gatttttgaactcagagaaaggaagatgaaatgagacagtgaaaatacaaatcctgcactgcacg-----tacgttcaagttcaactcaagacatacaga |
47719300 |
T |
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| Q |
311 |
actcttggattaagggcaaattgggaaattcagggggcataaaagatttttgggtatttaccaaataaaagaagcacggcccatattccagaattatttt |
410 |
Q |
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| T |
47719299 |
actcttggattaagggcaaattgggaaattcagggggcataaaagatttttgggta-ttaccaaataaaaaaagcacggcccatattccagaattatttt |
47719201 |
T |
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| Q |
411 |
ccttttccttcactcattagaagagtatataaacaccattctccataaccaaaaacacgattatcaaaatcgtaatcgataacccaa-cgctataaccgt |
509 |
Q |
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| T |
47719200 |
cc-tttccttcactcattagaagagtatataaacaccattctccataaccaaaaacacgattatc-aaatcgtaatcgataacccaaccgctataaccgt |
47719103 |
T |
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| Q |
510 |
aaacccttcacaattaccatatcgaaatcgctaaaaccctaaaccct |
556 |
Q |
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| T |
47719102 |
aaacccttcacaattaccatatcgaaatctctaaaaccctaaaccct |
47719056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 302 - 364
Target Start/End: Original strand, 15806 - 15868
Alignment:
| Q |
302 |
acatacagaactcttggattaagggcaaattgggaaattcagggggcataaaagatttttggg |
364 |
Q |
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| T |
15806 |
acatacaaaactcttgaatttagggcaaattgaaaaattcacggggcataaaagatttttggg |
15868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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