View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8729_low_4 (Length: 561)
Name: NF8729_low_4
Description: NF8729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8729_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 19 - 548
Target Start/End: Complemental strand, 31661988 - 31661456
Alignment:
| Q |
19 |
gtgaaaagtaggtgttacgacatacatagggaaggcaaattggctgcagattgctatggccaaaatttagctatgtttccgttgatacatagggaaagtt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31661988 |
gtgaaaagtaggtgttacgacatacatagggaaggcaaattggctgcagattgctatggccaaaatttagctatgtttccgttgatacatagggaaagtt |
31661889 |
T |
|
| Q |
119 |
t-catttactatgactgttaatttgtaatgtgtcctctttgttaagggttcaggccctatcctgattctttagtgcttttcttgcttgatcnnnnnnn-- |
215 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31661888 |
ttcatttactatgactgttaatttgtaatgtgtcctctttgttaagggttcaggccctatcctgattctttagtgcttttcttgcttgataaaaaaaaaa |
31661789 |
T |
|
| Q |
216 |
gtatcttatcatgtgcatgcaatctatatatgttcctcaattcatttttatacatgccttggattttcactatgactgtgtattgagtttttgaaatatc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31661788 |
gtatcttatcatgtgcatgcaatctatatatgttcctcaattcatttttatacatgccttggattttcactatgactgtgtattgagtttttgaaatatc |
31661689 |
T |
|
| Q |
316 |
acaagaatttatttcaattgaagggtttagaaagttgtccattttatttgttgatggatactatgactgtgtatcgagttcttgaatgaattttattaac |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31661688 |
acaagaatttatttcaattgaagggtttagaaagttgtccattttatttgttgatggatactatgactgtgtatcgagttcttgaatgaattttattaac |
31661589 |
T |
|
| Q |
416 |
tataatagtagtaatatatttgtgcataaaacagaattttagcatagagattcagagacattattgtctatcaaatgcttgaataagacaagtagtaatg |
515 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31661588 |
tataatagtagtaatatgtttgtgcataaaacagaattttagcatagagattcagagacattattgtctatcaaatgcttgaataagacaagtagtaatg |
31661489 |
T |
|
| Q |
516 |
tgcttgtgtataaactagaaggttaacacaggt |
548 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
31661488 |
tgcttgtgtataaactagaaggttaacacaggt |
31661456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 19 - 547
Target Start/End: Complemental strand, 31683457 - 31682930
Alignment:
| Q |
19 |
gtgaaaagtaggtgttacgacatacatagggaaggcaaattggctgcagattgctatggccaaaatttagctatgtttccgttgatacatagggaaagtt |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
31683457 |
gtgaaaagtaggtgctacgacatacatagggaaggcaaattggctgcagattgctatggccaaaatttagctatgtttccgttgatccatagggaaagtt |
31683358 |
T |
|
| Q |
119 |
t-catttactatga-ct-gttaat--ttgtaatgtgtcctctttgttaagggttcaggccctatcctgattctttagtgcttttcttgcttgatcnnnnn |
213 |
Q |
| |
|
| |||||||||||| || ||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31683357 |
ttcatttactatgatctagtttctgtttgtaatgtgtcctctttgttaagggttcaggccctatcctgattcattagtgcttttcttgcttgatcaaaaa |
31683258 |
T |
|
| Q |
214 |
nn-gtatcttatcatgtgcatgcaatctatatatgttcctcaattcatttttatacatgccttggattttcactatgactgtgtattgagtttttgaaat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31683257 |
aaagtatcttatcatgtgcatgcaatctatacatgttcctcaattcatttttatacatgccttggattttcactatgactgtgtattgagtttttgaaat |
31683158 |
T |
|
| Q |
313 |
atcacaagaatttatttcaattgaagggtttagaaagttgtccattttatttgttgatggatactatgactgtgtatcgagttcttgaatgaattttatt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31683157 |
atcacaagaatttatttcaattgaagggtttagaaagttgtccattttatttgttgatggatactatgactgtgtatcgagttcttgaatgaattttatt |
31683058 |
T |
|
| Q |
413 |
aactataatagtagtaatatatttgtgcataaaacagaattttagcatagagattcagagacattattgtctatcaaatgcttgaataagacaagtagta |
512 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31683057 |
aactataat---agtaatatgtttgtgcataaaacagaattttagcatagagattcagagacattattgtctatcaaatgcttgaataagacaagtagta |
31682961 |
T |
|
| Q |
513 |
atgtgcttgtgtataaactagaaggttaacacagg |
547 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| |
|
|
| T |
31682960 |
atgtggttgtgt----actagaaggttaacacagg |
31682930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 11980650 - 11980839
Alignment:
| Q |
19 |
gtgaaaagtaggtgttacgacatacatagggaaggcaaattggctgcagattgctatggccaaaatttagctatgtttccgttgatacatagggaaag-t |
117 |
Q |
| |
|
||||||||||| |||||| ||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||| ||||||| || | |
|
|
| T |
11980650 |
gtgaaaagtagatgttaccacatacataaggaaggcaacttggctgcagattgctttggccaaaatttagctatgtttccattgataaatagggatagtt |
11980749 |
T |
|
| Q |
118 |
ttcatttactatg----actgttaatttgtaatgtgtcctctttgttaagggttcaggccctatcctgattctttagtgcttttcttgct |
203 |
Q |
| |
|
|||||||||| || | | | ||||||||||||| |||| || |||||||||| ||||| |||| ||||||||||||||||||||| |
|
|
| T |
11980750 |
ttcatttactgtgctctagtttctgtttgtaatgtgtcttcttggtcaagggttcagtccctaacctgcttctttagtgcttttcttgct |
11980839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 38171677 - 38171489
Alignment:
| Q |
22 |
aaaagtaggtgttacgacatacatagggaaggcaaattggctgcagattgctatggccaaaatttagctatgtttccgttgatacatagggaaagttt-c |
120 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||| || |||||||| || ||||| ||||||||||||||| ||| | |||||||| ||||| | |
|
|
| T |
38171677 |
aaaagtagatgttacgacatacatagggaaggcaacttggttgtagattgctttgaccaaattttagctatgtttcctttgcttcatagggatagtttac |
38171578 |
T |
|
| Q |
121 |
atttactatg----actgttaatttgtaatgtgtcctctttgttaagggttcaggccctatcctgattctttagtgcttttcttgcttgat |
207 |
Q |
| |
|
|||| | ||| | | || ||||||||||||||| |||||||||||||||||||||| |||| ||| ||| ||||||||||||||||| |
|
|
| T |
38171577 |
atttcccatgctctagtatttgtttgtaatgtgtcct-tttgttaagggttcaggccctaacctgcttc-ttactgcttttcttgcttgat |
38171489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 454 - 546
Target Start/End: Original strand, 32835260 - 32835352
Alignment:
| Q |
454 |
ttagcatagagattcagagacattattgtctatcaaatgcttgaataagacaagtagtaatgtgcttgtgtataaactagaaggttaacacag |
546 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||| |||| ||||||||||| ||||| ||||| ||||||||| |||||| |
|
|
| T |
32835260 |
ttagcatagagattcagagacattattgtatatcgaatgcttgaatatgacaggtagtaatgtgtttgtgcataaattagaaggtttacacag |
32835352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 216 - 291
Target Start/End: Original strand, 32834780 - 32834855
Alignment:
| Q |
216 |
gtatcttatcatgtgcatgcaatctatatatgttcctcaattcatttttatacatgccttggattttcactatgac |
291 |
Q |
| |
|
|||||||||||| |||||| ||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32834780 |
gtatcttatcatatgcatggaatctatgtatgttccttaattcatttttatacatgccttggatttttactatgac |
32834855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 216 - 291
Target Start/End: Original strand, 32841159 - 32841234
Alignment:
| Q |
216 |
gtatcttatcatgtgcatgcaatctatatatgttcctcaattcatttttatacatgccttggattttcactatgac |
291 |
Q |
| |
|
||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32841159 |
gtatcttattgtatgcatgcaatctatatatgctcctcaattcatttttatacatgccttggatttttactatgac |
32841234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 294 - 377
Target Start/End: Original strand, 32841261 - 32841344
Alignment:
| Q |
294 |
tgtattgagtttttgaaatatcacaagaatttatttcaattgaagggtttagaaagttgtccattttatttgttgatggatact |
377 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
32841261 |
tgtattgagtttttggaatatcacaagaatttatttcaattgaattatgtagaaagttttccatttcatttgttgatggatact |
32841344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 294 - 377
Target Start/End: Original strand, 32834882 - 32834965
Alignment:
| Q |
294 |
tgtattgagtttttgaaatatcacaagaatttatttcaattgaagggtttagaaagttgtccattttatttgttgatggatact |
377 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||| | ||||||||| |||| || |||||||||||||||| |
|
|
| T |
32834882 |
tgtattgagtttttggaatatcactagaatttatttcaattgaattatgtagaaagttttccaattcttttgttgatggatact |
32834965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 424 - 482
Target Start/End: Original strand, 32841582 - 32841640
Alignment:
| Q |
424 |
tagtaatatatttgtgcataaaacagaattttagcatagagattcagagacattattgt |
482 |
Q |
| |
|
||||||||| |||||||||||| ||||| |||||||||||||||||| |||||||||| |
|
|
| T |
32841582 |
tagtaatatgtttgtgcataaatcagaaggttagcatagagattcagatacattattgt |
32841640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 516
Target Start/End: Complemental strand, 31682616 - 31682570
Alignment:
| Q |
470 |
gagacattattgtctatcaaatgcttgaataagacaagtagtaatgt |
516 |
Q |
| |
|
|||||||||||||||||||| |||||| ||| |||||||| |||||| |
|
|
| T |
31682616 |
gagacattattgtctatcaagtgcttgcatatgacaagtaataatgt |
31682570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 10302267 - 10302108
Alignment:
| Q |
19 |
gtgaaaagtaggtgttacgacatacatagggaaggcaaattggctgcagattgctatggccaaaatttagctatgtttccgttgatacatagggaaagtt |
118 |
Q |
| |
|
||||||| ||| |||||| |||||||||||||||||| |||||||||||||| | | |||||||||||||||||||||| ||| | |||||||| |||| |
|
|
| T |
10302267 |
gtgaaaattagatgttaccgcatacatagggaaggcaacttggctgcagattgatttagccaaaatttagctatgtttcctttgcttcatagggatagtt |
10302168 |
T |
|
| Q |
119 |
t-catttactatg--actgttaatttgtaatgtgtcctctttgttaagggttcaggccct |
175 |
Q |
| |
|
| ||||||| ||| | || ||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
10302167 |
tacatttaccatgctccagtatgtttgtaatgtgccctttttgttaagggttcaggccct |
10302108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 294 - 371
Target Start/End: Original strand, 7479403 - 7479480
Alignment:
| Q |
294 |
tgtattgagtttttgaaatatcacaagaatttatttcaattgaagggtttagaaagttgtccattttatttgttgatg |
371 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||| | ||||||||| | ||| | ||||||||||| |
|
|
| T |
7479403 |
tgtattgagtttttggaatttcacaagaatttatttcaattgaattatgtagaaagtttttcatataatttgttgatg |
7479480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University