View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8729_low_6 (Length: 377)
Name: NF8729_low_6
Description: NF8729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8729_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 361
Target Start/End: Original strand, 43965160 - 43965503
Alignment:
| Q |
18 |
aaaattgtatctcagcataaaaacacacccattatcgatggactgccactacacactacacacaccaaactgaaagacaagtaatctcccccacaacgct |
117 |
Q |
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| T |
43965160 |
aaaattgtatctcagcataaaaacacacccattatcgatggactgccactacacactacacacaccaaactgaaagacaagtaatctcccccacaacgct |
43965259 |
T |
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| Q |
118 |
tatggccaccaaatcatgctttgcttatttgccttggcaatatccttcaatacaaaactagcaccacacatcttcattgccaataacagaaaatcgctgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43965260 |
tatggccaccaaatcatgctttgcttatttgccttggcaatatccttcaatacaaaactagcaccacacatcttcattgccaataacagaaaatcgctgc |
43965359 |
T |
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| Q |
218 |
tactgatatacaaaaatcctgctatatcttgattgatacctcctgctactatatttgtttctcctcaatatcatttcggtcacctctattccatgcattt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43965360 |
tactgatatacaaaaatcctgctatatcttgattgatacctcctgctactatatttgtttctcctcaatatcatttcggtcacctctattccatgcattt |
43965459 |
T |
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| Q |
318 |
tcatgaatctaaacataatattaaagattttactcatattgatg |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43965460 |
tcatgaatctaaacataatattaaagattttactcatattgatg |
43965503 |
T |
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