View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8729_low_8 (Length: 292)
Name: NF8729_low_8
Description: NF8729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8729_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 51968090 - 51967812
Alignment:
| Q |
1 |
cctcgctctcctttgaagttgtccctcttcaaaaacagcttcaaattcagggtatgaattccttttttcctatgttattgagatccaaataatgatactg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
51968090 |
cctcgctctcctttgaagttgtccctcttcaaaaacagcttcaaattcagggtatgaattccttttttcctattttattgagatccaaataatgatactg |
51967991 |
T |
|
| Q |
101 |
atctgccttatttattttgatattattgtttgattcagagtagctgtggaatctgtttgaatagcgtgaaaacagggcagggtaaggcaatatacacagc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
51967990 |
atctgccttatttattttgatattattgtttgattcagagtagctgtggaatctgtttgaatagcgtgaaaacggggcaggggaaggcaatatacacagc |
51967891 |
T |
|
| Q |
201 |
agaatgtgcacatgcttttcatttcccttgcatagcagcacatgtacgcaaccatgctacccttgtttgccctctctgc |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
51967890 |
agaatgtgcacatgcttttcatttcccttgcatagcagcacatgtacgcaaccatgctacccttgtttgccctgtctgc |
51967812 |
T |
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