View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8730_high_11 (Length: 253)
Name: NF8730_high_11
Description: NF8730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8730_high_11 |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 14850676 - 14850437
Alignment:
| Q |
14 |
gacatcaggaaggcttatgaaagaatcgattgggattatctgaggagtataatggggaagatgggtttctgttcgaaatggtcagagtggattatgatgt |
113 |
Q |
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|||||||| |||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14850676 |
gacatcagcaaggcttatggtagaatcgattgggagtatctgaggagcataatggggaagatgggtttctgttcgaaatggtcagagtggattatgatgt |
14850577 |
T |
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| Q |
114 |
gcgtagagtcggttgactactctgttatattaaacggtgagaaaattggtccaattattccaggtcgtggcctcaggcaaggagatccgttatcaccgta |
213 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14850576 |
gcgtagagtcggttgactactctgttatattaaatggtgagaaaattggtccaattattccaggtcgtggcctcaggcaaggagatccgttatcaccgta |
14850477 |
T |
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| Q |
214 |
cctgttcatcatttgtgctgaagggctttcatcacttatt |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
14850476 |
cctgttcatcatttgtgctgaagggctttcatcacttatt |
14850437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 36303740 - 36303979
Alignment:
| Q |
14 |
gacatcaggaaggcttatgaaagaatcgattgggattatctgaggagtataatggggaagatgggtttctgttcgaaatggtcagagtggattatgatgt |
113 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36303740 |
gacatcaacaaggcttatgatagaatcgattgggattatctgaggagcataatggggaagatgggtttctgttcgaaatggtcagagtggattatgatgt |
36303839 |
T |
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| Q |
114 |
gcgtagagtcggttgactactctgttatattaaacggtgagaaaattggtccaattattccaggtcgtggcctcaggcaaggagatccgttatcaccgta |
213 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36303840 |
gcgtagagtcggtcgactactctgttatattaaacggtgagaaaattggtccaattattccaggtcgtggcctcaggcaaggagatccgttttcaccgta |
36303939 |
T |
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| Q |
214 |
cctgttcatcatttgtgctgaagggctttcatcacttatt |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
36303940 |
cctgttcatcatttgtgctgaagggctttcatcacttatt |
36303979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 11121392 - 11121631
Alignment:
| Q |
14 |
gacatcaggaaggcttatgaaagaatcgattgggattatctgaggagtataatggggaagatgggtttctgttcgaaatggtcagagtggattatgatgt |
113 |
Q |
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|||||||| | ||||||||| |||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11121392 |
gacatcagcacggcttatgatagaatcaattgggagtatctgaggagcataatggggaagatgggtttctgttcgaaatggtcagagtggattatgatgt |
11121491 |
T |
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| Q |
114 |
gcgtagagtcggttgactactctgttatattaaacggtgagaaaattggtccaattattccaggtcgtggcctcaggcaaggagatccgttatcaccgta |
213 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11121492 |
gcgtagagtcggttgactactctgttatattaaatggtgagaaaattggtccaattattccaggtcgtggcctcaggcaaggagatccgttatcaccgta |
11121591 |
T |
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| Q |
214 |
cctgttcatcatttgtgctgaagggctttcatcacttatt |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
11121592 |
cctgttcatcatttgtgctgaagggctttcatcacttatt |
11121631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 41 - 210
Target Start/End: Original strand, 39338813 - 39338982
Alignment:
| Q |
41 |
gattgggattatctgaggagtataatggggaagatgggtttctgttcgaaatggtcagagtggattatgatgtgcgtagagtcggttgactactctgtta |
140 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||| ||||||||| | || |
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| T |
39338813 |
gattgggattatctgaggagcataatggggaagatgggtttctgcactaaatggtcagagtggattatgatgtacgtagagtcgattgactactttattt |
39338912 |
T |
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| Q |
141 |
tattaaacggtgagaaaattggtccaattattccaggtcgtggcctcaggcaaggagatccgttatcacc |
210 |
Q |
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||||||| ||||||| ||||||||||||| ||| ||| || |||||||||||| |||||| ||||||||| |
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| T |
39338913 |
tattaaatggtgagagaattggtccaattgttctagggcgcggcctcaggcaatgagatctgttatcacc |
39338982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 20585606 - 20585676
Alignment:
| Q |
167 |
attattccaggtcgtggcctcaggcaaggagatccgttatcaccgtacctgttcatcatttgtgctgaagg |
237 |
Q |
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||||||||||||||||| | |||||||| |||||||| ||||| || || |||||| | ||||||||||| |
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| T |
20585606 |
attattccaggtcgtgggttaaggcaaggtgatccgttgtcaccttatctcttcatcctctgtgctgaagg |
20585676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 32021764 - 32021525
Alignment:
| Q |
14 |
gacatcaggaaggcttatgaaagaatcgattgggattatctgaggagtataatggggaagatgggtttctgttcgaaatggtcagagtggattatgatgt |
113 |
Q |
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||||| || ||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32021764 |
gacattagcaaggcttatgatagaatcgattgggagtatctgaggagcataatggggaagatgggtttctgttcgaaatggtcaaagtggattatgatgt |
32021665 |
T |
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| Q |
114 |
gcgtagagtcggttgactactctgttatattaaacggtgagaaaattggtccaattattccaggtcgtggcctcaggcaaggagatccgttatcaccgta |
213 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32021664 |
gcgtagagtcggttgactactctgttatattaaatggtgagaaaattggtccaattattccaggtcgtggcctcaggcaaggagatccgttatcaccgta |
32021565 |
T |
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| Q |
214 |
cctgttcatcatttgtgctgaagggctttcatcacttatt |
253 |
Q |
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| |||||||||||||||||||||||||||||||||||||| |
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| T |
32021564 |
catgttcatcatttgtgctgaagggctttcatcacttatt |
32021525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 12604137 - 12603898
Alignment:
| Q |
14 |
gacatcaggaaggcttatgaaagaatcgattgggattatctgaggagtataatggggaagatgggtttctgttcgaaatggtcagagtggattatgatgt |
113 |
Q |
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|||||||| ||| ||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
12604137 |
gacatcagcaagacttatgatagaatcaattgggattatctgaggagcataatggggaagatgggtttctgttcgaaatggttagagtggattatgatgt |
12604038 |
T |
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| Q |
114 |
gcgtagagtcggttgactactctgttatattaaacggtgagaaaattggtccaattattccaggtcgtggcctcaggcaaggagatccgttatcaccgta |
213 |
Q |
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|
|||||||||||||||||||||| ||||| ||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||| || |
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| T |
12604037 |
gcgtagagtcggttgactactcagttattttaaatggtgaaaaaattggtcccattgttccaggtcgtggcctcaggcaaggagattcgttatcacctta |
12603938 |
T |
|
| Q |
214 |
cctgttcatcatttgtgctgaagggctttcatcacttatt |
253 |
Q |
| |
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| |||||||||||| |||||||||| | |||||||||||| |
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| T |
12603937 |
catgttcatcatttttgctgaagggttgtcatcacttatt |
12603898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 105 - 253
Target Start/End: Original strand, 44000131 - 44000279
Alignment:
| Q |
105 |
ttatgatgtgcgtagagtcggttgactactctgttatattaaacggtgagaaaattggtccaattattccaggtcgtggcctcaggcaaggagatccgtt |
204 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44000131 |
ttatgatgtgcgtagagtcggttgactactctgttatattaaacggtgagaaaattggtccaattattccaggtcgtggcctcaggcaaggagatccgtt |
44000230 |
T |
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| Q |
205 |
atcaccgtacctgttcatcatttgtgctgaagggctttcatcacttatt |
253 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44000231 |
atcaccgtacctgttcatcatttgtgctgaagggctttcagcacttatt |
44000279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 16938017 - 16937965
Alignment:
| Q |
188 |
aggcaaggagatccgttatcaccgtacctgttcatcatttgtgctgaagggct |
240 |
Q |
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|||||||| ||||||||||| |||||| ||||||| |||||||||||||||| |
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| T |
16938017 |
aggcaaggcgatccgttatccccgtacttgttcattctttgtgctgaagggct |
16937965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 35222359 - 35222275
Alignment:
| Q |
159 |
ttggtccaattattccaggtcgtggcctcaggcaaggagatccgttatcaccgtacctgttcatcatttgtgctgaagggctttc |
243 |
Q |
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||||||| |||||||||||||| || || || ||||||||||| || || || ||| | ||||| |||||||| ||||| ||||| |
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| T |
35222359 |
ttggtcctattattccaggtcgaggactaagacaaggagatcctttgtcgccatacttattcattatttgtgcagaaggactttc |
35222275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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