View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8730_high_19 (Length: 212)
Name: NF8730_high_19
Description: NF8730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8730_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 1245845 - 1245659
Alignment:
| Q |
15 |
cctaggaaaaaggctactaatactaggcattagaattttcttccctttatccaacttcctcgcctccatgttttgtggaagtgaatgctgcttttgaatc |
114 |
Q |
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| T |
1245845 |
cctaggaaaaaggctactaatactaggcattagaattttcttccctttatccaacttcctcgcctccatgttttgtggaagtgaatgctgcttttgaatc |
1245746 |
T |
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| Q |
115 |
ttgtaaagccgaggagataaacgtgatgaagacgatgatgatgacggcattggtgtttcagccaatactcgagccacaggttctgct |
201 |
Q |
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| T |
1245745 |
ttgtaaagccgaggagataaacgtgatgaagacgataaagatgacggcattggtgtttcagccaatactcgagccacagtttctgct |
1245659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 42010507 - 42010321
Alignment:
| Q |
15 |
cctaggaaaaaggctactaatactaggcattagaattttcttccctttatccaacttcctcgcctccatgttttgtggaagtgaatgctgcttttgaatc |
114 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42010507 |
cctaggaaaaaagctactaatactaggcaatagaattttcttccctttttccaacttcctcgcctccatgttttgtggaagtgaatgctgcttttgaatc |
42010408 |
T |
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| Q |
115 |
ttgtaaagccgaggagataaacgtgatgaagacgatgatgatgacggcattggtgtttcagccaatactcgagccacaggttctgct |
201 |
Q |
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| T |
42010407 |
ttgtaaagccgaggagataaacgtgatgaagacgatgatgatgacggcattggtgtttcagccaatactcgagccacagtttctgct |
42010321 |
T |
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