View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8730_high_3 (Length: 447)
Name: NF8730_high_3
Description: NF8730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8730_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 8072649 - 8072238
Alignment:
| Q |
18 |
attacaacaggctgatgattaatgtttgtcattttctgttccaactcagtcatgcgtttcatgacagtcacaaactctgcaggatggagacagagatgag |
117 |
Q |
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| T |
8072649 |
attacaacaggctgatgattaatgtttgtcattttctgttccaactcagtcatgcgtttcatgacagtcacaaactctgcaggatggagacagagatgag |
8072550 |
T |
|
| Q |
118 |
tggaaataaactcagattaataatgttaagccattcacaaagatatgaaaatgtccacacaaatgttttcattttatatagagacaaatatttttataat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8072549 |
tggaaataaactcagattaataatgttaagccattcacaaagatatgaaaatgtccacacaaatgttttcattttgtatagagacaaatatttttataat |
8072450 |
T |
|
| Q |
218 |
cgcaaacaaggtggaagaaaagcatgtgtaggatcagggttttaaaccaaggatctatgtgtgtgtcgccaactagctcgactaagagtattatatattt |
317 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8072449 |
cgcaaacaaggtggaagaaaagcacgtgtaggatcagggttttaaaccaaggatctatgtgtgtgtcgtcaactagctcgactaagagtattatatattt |
8072350 |
T |
|
| Q |
318 |
cctttttaaaccttaggttattttaaaaaagaatgcatttgacacaaatcaagtcatatcttaaaagaaatatataatttggtccaccaccatgtacctt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8072349 |
cctttttaaaccttaggttattttaaaaaagaatgcatttgacacaaatcaagtcatatcttaaaagaaatatataatttggtccaccaccatgtacctt |
8072250 |
T |
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| Q |
418 |
ctgaggttgcca |
429 |
Q |
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|||||||||||| |
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| T |
8072249 |
ctgaggttgcca |
8072238 |
T |
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