View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8730_high_7 (Length: 265)
Name: NF8730_high_7
Description: NF8730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8730_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 2190036 - 2189806
Alignment:
| Q |
18 |
aggcttttacttcatagagccgtggagtgttgtcctttacatgtggaattgtggcttgcactggctaggttggaaacttatgacaatgctaagattgttc |
117 |
Q |
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| T |
2190036 |
aggcttttacttcatagagccgtggagtgttgtcctttacatgcggaattgtggcttgcactggccaggttggaaacttatgacaatgctaagattgttc |
2189937 |
T |
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| Q |
118 |
tcaataaggcacttgctaggttgccaaaggaggcgactatatggatagcgatggccaagttggaagaagctaatgggaatacagacaaggttggcaagag |
217 |
Q |
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| T |
2189936 |
tcaataaggcactttctaggttgccaaaggaggcgactatatggatagcgatggccaagttggaagaagctaatgggaatacagacaaggttggcaagag |
2189837 |
T |
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| Q |
218 |
aattcagaaggctttggaggaaggaggtgtg |
248 |
Q |
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| T |
2189836 |
aattcagaaggctttggaggaaggaggtgtg |
2189806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 25165694 - 25165521
Alignment:
| Q |
21 |
cttttacttcatagagccgtggagtgttgtcctttacatgtggaattgtggcttgcactggctaggttggaaacttatgacaatgctaagattgttctca |
120 |
Q |
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| T |
25165694 |
cttttacttcacagagctgtggaattttgtccattgcatgtagaattgtggcttgcgcttgctaggttggaaacttatgacaatgccaagaaggttctca |
25165595 |
T |
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| Q |
121 |
ataaggcacttgctaggttgccaaaggaggcgactatatggatagcgatggccaagttggaagaagctaatggg |
194 |
Q |
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| T |
25165594 |
ataaggcaagagaggggctgcccaaggagccagcaatatggataacggccgccaagttggaagaagctaatggg |
25165521 |
T |
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