View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8730_low_11 (Length: 254)
Name: NF8730_low_11
Description: NF8730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8730_low_11 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 4 - 241
Target Start/End: Complemental strand, 14850379 - 14850142
Alignment:
| Q |
4 |
atcatatcccaccttctgttcgcggacgactggtttcttttgtttaaagctaaaagtggtcaagctcagggtatgaaaaatatattagaaatttatgaaa |
103 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14850379 |
atcatatcccatcttctgttcgcggatgactgttttcttttctttaaagctaaaagtggtcaagctcagggtatgaaaaatatattagaaatgtatgaaa |
14850280 |
T |
|
| Q |
104 |
gtgcttctggtcagtctataaattttcagaagttcgaagttttttatagcaggaatgtagatgatgcagtcaaagcttctatctctcaaatcttaggagt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14850279 |
gtgcttctggtcagtctataaattttcagaagtccgaagttttttatagcaggaatgtagatgatgcagtcaaagcttctatctctcaaatcttaggagt |
14850180 |
T |
|
| Q |
204 |
tcaacaggttatgggaacaggtaaataccttgatgtcc |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14850179 |
tcaacaggttatgggaacaggtaaataccttggtgtcc |
14850142 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 4 - 241
Target Start/End: Complemental strand, 32021467 - 32021230
Alignment:
| Q |
4 |
atcatatcccaccttctgttcgcggacgactggtttcttttgtttaaagctaaaagtggtcaagctcagggtatgaaaaatatattagaaatttatgaaa |
103 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
32021467 |
atcatatcccatcttctgttcgcggatgactgttttcttttctttaaagctaaaagtggtcaagctcagggtatgaaaaatatattagaaatgtatgaaa |
32021368 |
T |
|
| Q |
104 |
gtgcttctggtcagtctataaattttcagaagttcgaagttttttatagcaggaatgtagatgatgcagtcaaagcttctatctctcaaatcttaggagt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32021367 |
gtgcttctggtcagtctataaattttcagaagtccgaaattttttatagcaggaatgtagatgatgcagtcaaagcttctatctctcaaatcttaggagt |
32021268 |
T |
|
| Q |
204 |
tcaacaggttatgggaacaggtaaataccttgatgtcc |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32021267 |
tcaacaggttatgggaacaggtaaataccttggtgtcc |
32021230 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 4 - 241
Target Start/End: Original strand, 11121689 - 11121926
Alignment:
| Q |
4 |
atcatatcccaccttctgttcgcggacgactggtttcttttgtttaaagctaaaagtggtcaagctcagggtatgaaaaatatattagaaatttatgaaa |
103 |
Q |
| |
|
|||||||| || |||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
11121689 |
atcatatctcatcttctgttcgcggatgactgctttcttttctttaaagctaaaagtggtcaagctcagggtatgaaaaatatattagaaatgtatgaaa |
11121788 |
T |
|
| Q |
104 |
gtgcttctggtcagtctataaattttcagaagttcgaagttttttatagcaggaatgtagatgatgcagtcaaagcttctatctctcaaatcttaggagt |
203 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11121789 |
gttcttctggtcagtctataaattttcagaagtccgaagttttttatagcaggaatgtagatgatgcagtcaaagcttctatctctcaaatcttaggagt |
11121888 |
T |
|
| Q |
204 |
tcaacaggttatgggaacaggtaaataccttgatgtcc |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11121889 |
tcaacaggttatgggaacaggtaaataccttggtgtcc |
11121926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 39339088 - 39339262
Alignment:
| Q |
20 |
tgttcgcggacgactggtttcttttgtttaaagctaaaagtggtcaagctcagggtatgaaaaatatattagaaatttatgaaagtgcttctggtcagtc |
119 |
Q |
| |
|
|||| |||||||| || || ||||| |||||||||||||||||||||||| || ||||||||||||| ||||||| | ||||||||||||||||||||| |
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|
| T |
39339088 |
tgtttgcggacgattgtttccttttctttaaagctaaaagtggtcaagcttagactatgaaaaatatactagaaatgtgtgaaagtgcttctggtcagtc |
39339187 |
T |
|
| Q |
120 |
tataaattttcagaagttcgaagttttttatagcaggaatgtagatgatgcagtcaaagcttctatctctcaaat |
194 |
Q |
| |
|
|||||| ||| |||||| |||||||| |||||| |||||| |||||||| ||||| ||||| || |||||||| |
|
|
| T |
39339188 |
tataaacttttagaagtctgaagttttccatagcaagaatgtggatgatgctgtcaaggcttccatatctcaaat |
39339262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 4 - 241
Target Start/End: Original strand, 44000337 - 44000574
Alignment:
| Q |
4 |
atcatatcccaccttctgttcgcggacgactggtttcttttgtttaaagctaaaagtggtcaagctcagggtatgaaaaatatattagaaatttatgaaa |
103 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||| |||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||| |
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|
| T |
44000337 |
atcatatcccatcttctattcgcagacgactgctttcttttctttaaagctaaaagtggtcaagcgctgggtatgaaaaatatattagaaatgtatgaaa |
44000436 |
T |
|
| Q |
104 |
gtgcttctggtcagtctataaattttcagaagttcgaagttttttatagcaggaatgtagatgatgcagtcaaagcttctatctctcaaatcttaggagt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
44000437 |
gtgcttctggtcagtctataaattttcaaaagtccgaagttttttatagcaggaatgtaaatgatgcagtcaaagcttctatctctcaaatcttaggcgt |
44000536 |
T |
|
| Q |
204 |
tcaacaggttatgggaacaggtaaataccttgatgtcc |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44000537 |
tcaacaggttatgggaacaggtaaataccttggtgtcc |
44000574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 12603843 - 12603609
Alignment:
| Q |
1 |
ccaatcatatcccaccttctgttcgcggacgactggtttcttttgtttaaagctaaaagtggtcaagctcagggtatgaaaaatatattagaaatttatg |
100 |
Q |
| |
|
||||||||||| || ||| |||||||||| ||||| || ||||| ||| |||||||||||||||||||||| ||||||||||||||||||| || |||| |
|
|
| T |
12603843 |
ccaatcatatctcatcttttgttcgcggatgactgcttccttttctttcaagctaaaagtggtcaagctcaaagtatgaaaaatatattagagatatatg |
12603744 |
T |
|
| Q |
101 |
aaagtgcttctggtcagtctataaattttcagaagttcgaagttttttatagcaggaatgtagatgatgcagtcaaagcttctatctctcaaatcttagg |
200 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||| ||||| |||||||||||||| || ||||||||||||| |||||| |
|
|
| T |
12603743 |
aaagtgcttctggccagtccataaattttcagaaattcgaagttttctatagcataaatgtggatgatgcagtcaaggcctctatctctcaaaccttagg |
12603644 |
T |
|
| Q |
201 |
agttcaacaggttatgggaacaggtaaataccttg |
235 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
12603643 |
agttcaacaggttatgggaacaggaaaataccttg |
12603609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 4 - 241
Target Start/End: Original strand, 36304037 - 36304252
Alignment:
| Q |
4 |
atcatatcccaccttctgttcgcggacgactggtttcttttgtttaaagctaaaagtggtcaagctcagggtatgaaaaatatattagaaatttatgaaa |
103 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
36304037 |
atcatatcccatcttctgttcgcggacgacttctttcttttctttaaagctaaaagtggtcaagctcggggt----------------------atgaaa |
36304114 |
T |
|
| Q |
104 |
gtgcttctggtcagtctataaattttcagaagttcgaagttttttatagcaggaatgtagatgatgcagtcaaagcttctatctctcaaatcttaggagt |
203 |
Q |
| |
|
|||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36304115 |
gtgcttctagccagtctataaattttcagaagtccgaagttttttatagcaggaatgtagatgatgcagtcaaagcttctatctctcaaatcttaggagt |
36304214 |
T |
|
| Q |
204 |
tcaacaggttatgggaacaggtaaataccttgatgtcc |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36304215 |
tcaacaggttatgggaacaggtaaataccttggtgtcc |
36304252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 21105420 - 21105351
Alignment:
| Q |
166 |
gatgcagtcaaagcttctatctctcaaatcttaggagttcaacaggttatgggaacaggtaaataccttg |
235 |
Q |
| |
|
||||||||||| || ||||||||||||||| | ||||||||||||||||||| || ||| |||||||||| |
|
|
| T |
21105420 |
gatgcagtcaaggcctctatctctcaaatcgttggagttcaacaggttatggaaaaaggcaaataccttg |
21105351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 10982867 - 10982806
Alignment:
| Q |
75 |
tatgaaaaatatattagaaatttatgaaagtgcttctggtcagtctataaattttcagaagt |
136 |
Q |
| |
|
|||||||||||| |||| || ||||||||||||||||||||| |||| ||||| ||||||| |
|
|
| T |
10982867 |
tatgaaaaatattttagtaacttatgaaagtgcttctggtcaagctatcaatttccagaagt |
10982806 |
T |
|
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