View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8730_low_17 (Length: 239)
Name: NF8730_low_17
Description: NF8730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8730_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 24277210 - 24277432
Alignment:
| Q |
1 |
aggttcgcaatttatctgcaactgtaatttaaaatcctgattggatgagttaaacacgagtttagatacacaaaatttagaataaaatagtgttttagta |
100 |
Q |
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| T |
24277210 |
aggtttgcaatttatctgcaactacaatttaaaatcatgattggatgagttaaacacgagtttagatacacaaaatttaaaataaaatagtattttaata |
24277309 |
T |
|
| Q |
101 |
attgaaattgtgtggatttgtgaatttagtcccttaaattgaataatgtaagttaagttgatattttcttttcaagtttatcaccaaaatttaagtgtta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24277310 |
attgaaattgtgtggatttgtgaatttagtcccttaaattgaacaatgtaagtcaagttgatattttcttttcaagtttatcaccaaaatttaagtgtta |
24277409 |
T |
|
| Q |
201 |
tatgtttgttttaatgtagtaag |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
24277410 |
tatgtttgttttaatgtagtaag |
24277432 |
T |
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