View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8730_low_2 (Length: 453)
Name: NF8730_low_2
Description: NF8730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8730_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 1245623 - 1245186
Alignment:
| Q |
1 |
ctcactgtccaccattttccttgctttttcagccatctcggcctttttcaaggcctcatgcgttgctttctttatatcctcaatttccatctgagttgcc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1245623 |
ctcactgtccaccattttccttgctttttcagccatctcggcctttttcaaggcctcatgcgttgctttctttatatcctcaatttccatctgagttgcc |
1245524 |
T |
|
| Q |
101 |
tctaactttatgagagcctcattttcactgaactttgcagcttcaatatgtgctgtcgcagccgccacttttgcactcgctagtttatcacactcctcag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1245523 |
tctaactttatgagagcctcattttcactgagctttgcagcttcaatatgtgctgtcgcagccgccacttttgcactcgctagtttatcacactcctcag |
1245424 |
T |
|
| Q |
201 |
ctctgcggtttaaggactcatattcctccctcgagatagtaattctcgcactgggttcagtcgttgaagcgtgagcagtattattcctttcagataagtc |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1245423 |
ctctgcagtttaaggactcatattcctccctcgagatagtaattctagcaccggattcagtcgttgaagcgtgagcagtattattcctttcggataagtc |
1245324 |
T |
|
| Q |
301 |
tctgatctgatcatgaatacggtcctctgctgcttttgccgcttctgcttcttctaatgctagtttaagcttcatttctgcatcttttaatgcatgtttg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1245323 |
tctgatctgatcatgaatacggtcctctgctgcttttgccgcttctgcttcttctaatgctagtttgagcttcatttctgcatcttttaatgcatgtttg |
1245224 |
T |
|
| Q |
401 |
gtgacttcagcttccaccttcaattcgattgcattgat |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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| T |
1245223 |
gtgacttcagcttccaccttcaattcgattgcattgat |
1245186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 23788243 - 23788166
Alignment:
| Q |
32 |
gccatctcggcctttttcaaggcctcatgcgttgctttctttatatcctcaatttccatctgagttgcctctaacttt |
109 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| | || ||||| ||||| ||| ||||||||||||| |||||| |
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|
| T |
23788243 |
gccatctcggcctttttcaaggcctcctgtgttgcagttttcatatcttcaatctccttctgagttgcctccaacttt |
23788166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 42010285 - 42009848
Alignment:
| Q |
1 |
ctcactgtccaccattttccttgctttttcagccatctcggcctttttcaaggcctcatgcgttgctttctttatatcctcaatttccatctgagttgcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42010285 |
ctcactgtccaccattttccttgctttttcagccatctcggcctttttcaaggcctcatgcgttgctttctttatatcctcaatttccatctgagttgcc |
42010186 |
T |
|
| Q |
101 |
tctaactttatgagagcctcattttcactgaactttgcagcttcaatatgtgctgtcgcagccgccacttttgcactcgctagtttatcacactcctcag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42010185 |
tctaactttatgagagcctcattttcactgagctttgcagcttcaatatgtgctgtcgcagccgccacttttgcactcgctagtttatcacactcctcag |
42010086 |
T |
|
| Q |
201 |
ctctgcggtttaaggactcatattcctccctcgagatagtaattctcgcactgggttcagtcgttgaagcgtgagcagtattattcctttcagataagtc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42010085 |
ctctgcggtttaaggactcatattcctccctcgagatggtaattctagcaccggattcagtcgttgaagcgtgagcagtattattcctttcagataagtc |
42009986 |
T |
|
| Q |
301 |
tctgatctgatcatgaatacggtcctctgctgcttttgccgcttctgcttcttctaatgctagtttaagcttcatttctgcatcttttaatgcatgtttg |
400 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42009985 |
tctgatctgatcaagaatacggtcctctgctgcttttgccacttctgcttcttctaatgctagtttaagcttcatttctgcatcttttaatgcatgtttt |
42009886 |
T |
|
| Q |
401 |
gtgacttcagcttccaccttcaattcgattgcattgat |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42009885 |
gtgacttcagcttccaccttcaattcgattgcattgat |
42009848 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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