View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8730_low_23 (Length: 219)
Name: NF8730_low_23
Description: NF8730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8730_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 30 - 180
Target Start/End: Original strand, 53538732 - 53538881
Alignment:
| Q |
30 |
agagagaagactaatgagtgaggggacatgttaatgagagaccatgtatgaaaccaaccaaagcaaagaaatgttaacatgcaatggcttgaaaagaaaa |
129 |
Q |
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| T |
53538732 |
agagaaaagactaatgagtgaggggacatgttaatgagagaccatgtatgaaaccaaccaaagcaaagaaatgttaacatgcaatggc-tgaaaagaaaa |
53538830 |
T |
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| Q |
130 |
aggaaagggatacagagattacaaaatttaataaactaaggatataatatc |
180 |
Q |
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| T |
53538831 |
aggaaaggggtacagggattacaaaatttaacaaactaaggatataatatc |
53538881 |
T |
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Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 7120075 - 7120174
Alignment:
| Q |
42 |
aatgagtgaggggacatgttaatgagagaccatgtatgaaaccaaccaaagcaaagaaatgttaacatgcaatggcttgaaaagaaaaaggaaagggata |
141 |
Q |
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| T |
7120075 |
aatgagtgagaggaaatgttaatgagagaccatgtatagaaccaaccaaagcaaagaaatgttaacatgcaatggcttgaaaagaataaggaaagggata |
7120174 |
T |
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