View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8730_low_4 (Length: 380)
Name: NF8730_low_4
Description: NF8730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8730_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 7 - 365
Target Start/End: Original strand, 8871063 - 8871419
Alignment:
| Q |
7 |
caaacaaatacggaaaaagcttcgcgatctcatctacatgcaaacatcaagttagaaaaacagatcaagtacagatcgaagtgaatgaaatgaacggcga |
106 |
Q |
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| T |
8871063 |
caaacaaatacggaaaaagcttcgcgatctcatctacatgcaaacatcaagttagaaaaccagatcaagtacagatcgaagtgaatgaaatgaacggcga |
8871162 |
T |
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| Q |
107 |
agatttacctggatttccagcggcggaggatttaggaccatcgacaatggcaaacggtgcttggagaacggagggaagacggagtttgtgatcgacacgg |
206 |
Q |
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| T |
8871163 |
agatttacctggatttccagcggcggaggatttaggaccatcgacaatggcgaacggtgcttggagaacggagggaagacggagtttgtgatcgacacgg |
8871262 |
T |
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| Q |
207 |
ctgttttggacttcgctgtagacggaggcgaagcgtgttgtgacggtgggagtgacggtggtggtgccgttagttacgattgcagctggtgccannnnnn |
306 |
Q |
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| T |
8871263 |
ctgttttggacttcgctgtagacggaggcgaagcgtgttgtgacggtgggagtgacggtggtggtgccgttagttacgattgcagctggtgccatttttt |
8871362 |
T |
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| Q |
307 |
ngagagagagtgtagttgttgagtagtgttgaaaagcgtggatctctaagatttgtttt |
365 |
Q |
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| T |
8871363 |
t--gagagagtgtagttgttgagtagtgttgaaaagcgtgaatctctaagatttgtttt |
8871419 |
T |
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