View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8730_low_5 (Length: 363)
Name: NF8730_low_5
Description: NF8730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8730_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 37 - 289
Target Start/End: Original strand, 25392777 - 25393029
Alignment:
| Q |
37 |
aagatcgtgacttcgttgttataaacaaacatgagtctaattgtggtatttagttttgaaacannnnnnnnacagtacatgattcaatgattatttgaca |
136 |
Q |
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| T |
25392777 |
aagatcgtgacttcgttgttataaacaaacatgtgtctaattgcggtattgagttttgaaacattttttttatagtacatgattcaatgattatttgata |
25392876 |
T |
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| Q |
137 |
caaatatgattatctacactaatagattaggactaagaataaaacttgggtccaatgtgtaagcattttttaagacaaaaaaccaatttgacacgaaaat |
236 |
Q |
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| T |
25392877 |
caaatatgattatctacactaatagattaggactaagaataaaacttgggtccaatgtgtaagcattttttaagacaaaaaaccaatttgacacgaaaat |
25392976 |
T |
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| Q |
237 |
ataatgacatctttagacacgtttgtataatttaagttaaacataacccgttt |
289 |
Q |
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| T |
25392977 |
ataatgacatctttagacacgtttgtataatttaagttaaacataacccgttt |
25393029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 287 - 347
Target Start/End: Original strand, 25393067 - 25393127
Alignment:
| Q |
287 |
tttgtatatttatctaatcttaacttgtatatttctttctttagattccatcccaaaaaac |
347 |
Q |
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| T |
25393067 |
tttgtatatttatctaatcttaacttgtatatttctttctttagattccatcccaaaaaac |
25393127 |
T |
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