View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8730_low_8 (Length: 301)
Name: NF8730_low_8
Description: NF8730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8730_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 42009466 - 42009738
Alignment:
| Q |
18 |
atcagctattcagaaggaaattgaaaataaaaagatgccggaccttgaacaagtgaaaagtgtcactttggagcttgatggtgctaaggaaacactgcag |
117 |
Q |
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| T |
42009466 |
atcagctattcagaaggaaattgaaaataaaaagatgtcggaccttgaacaagtgaaaagtgtcgctttggagcttgatggtgctaaggaaacactgcag |
42009565 |
T |
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| Q |
118 |
aaagtatcagaagaagaaagctctcttagaagcttggtggaagctcttcggatggatttggagtatgtaaaaagagaccactcagaattgaaggaaacag |
217 |
Q |
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| T |
42009566 |
aaagtatcagaagaagaaagctctcttagaagcttggtggaagctcttcggatggatttggagtatgtaaaaagagaccactcagaattgaaggaaacag |
42009665 |
T |
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| Q |
218 |
aatgcgaaactgaatccattgttaagaatatgcatgccgagcttctgagatgtgagtcagagcttgatgtcca |
290 |
Q |
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| T |
42009666 |
aatgcgaaactgaatccattgttaagaatatgcatgccgagcttcagagatgtgagtcagagcttgatgtcca |
42009738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 1244804 - 1245074
Alignment:
| Q |
18 |
atcagctattcagaaggaaattgaaaataaaaagatgccggaccttgaacaagtgaaaagtgtcactttggagcttgatggtgctaaggaaacactgcag |
117 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1244804 |
atcagctattcagaagaaaattgaaaataaaaagatgtcggaccttgaacaagtgaaaagtgtcactttggagcttgatggtgctaaggaaacactgcag |
1244903 |
T |
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| Q |
118 |
aaagtatcagaagaagaaagctctcttagaagcttggtggaagctcttcggatggatttggagtatgtaaaaagagaccactcagaattgaaggaaacag |
217 |
Q |
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| T |
1244904 |
aaagtatcagaagaagaaagctctcttagaagcttggtggaagctcttcggatggatttggagtatgtaaaaagagaccactcagaattgaaggaaacag |
1245003 |
T |
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| Q |
218 |
aatgcgaaactgaatccattgttaagaatatgcatgccgagcttctgagatgtgagtcagagcttgatgtc |
288 |
Q |
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| T |
1245004 |
aatgcgaaactgaatccattgttaagaatatgcatgccgagcttcagagatgtgagtcagagcttgatgtc |
1245074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 23787504 - 23787589
Alignment:
| Q |
70 |
gtgaaaagtgtcactttggagcttgatggtgctaaggaaacactgcagaaagtatcagaagaagaaagctctcttagaagcttggt |
155 |
Q |
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| T |
23787504 |
gtgaaaactgttacttcggagcttgatggtgcgaaagaatcactgcagaaagtagtagatgaagaaaacactcttcgaagcttggt |
23787589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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