View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8731_high_1 (Length: 457)
Name: NF8731_high_1
Description: NF8731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8731_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 13 - 446
Target Start/End: Complemental strand, 43387586 - 43387153
Alignment:
| Q |
13 |
aattctaacccttatcacaataatgatatatctcctcctcctccttcctcgtccgatttcattaatttatctgattatctggtgctggatgatgaacatc |
112 |
Q |
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| T |
43387586 |
aattctaacccttatcacaataataatatatctcctcctcctcctttctcgtctgatttcattaatttatctgattatctggtgctggatgatgaacatc |
43387487 |
T |
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| Q |
113 |
aagaatgttggtcacaaagtacaggaactgaatcatcagacaacaaggcaccttccaccaccattgatattaatgtcatcaatcaaggattaatttgtga |
212 |
Q |
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| T |
43387486 |
aagaatgttggtcacaaagtacaggaactgaatcatcagacaacaaggcaccttccaccaccattgatattaatgtcatcaatcaaggattaatttgtga |
43387387 |
T |
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| Q |
213 |
tgaaattgaaacctctaccaacaacaacaataacatgatgcaagtgcttttcatatgttaaccacttatgtgatgttaattcttgacatacagataaata |
312 |
Q |
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| T |
43387386 |
tgaaattgaaacctctaccaacaacaacaataacatgatgcaagtgcttttcatatgttaaccacttatgtgatgttaattcttgacatacagataaata |
43387287 |
T |
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| Q |
313 |
taataatgtatatatattttggattctttggtttgacaggaaacgtaaaagcggggtgatgaaggaaaatacagtagatgtgagcccaagggttacgttt |
412 |
Q |
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| T |
43387286 |
taataatgtatatatattttggattctttggtttgacaggaaacgtaaaagcggggtgatgaaggaaaatacagtagatgtgagcccaagggttacgttt |
43387187 |
T |
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| Q |
413 |
agaacgagatcgcagcttgagattatggatgatg |
446 |
Q |
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| T |
43387186 |
agaacgagatcgcagcttgagattatggatgatg |
43387153 |
T |
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