View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8731_low_11 (Length: 214)

Name: NF8731_low_11
Description: NF8731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8731_low_11
NF8731_low_11
[»] chr3 (1 HSPs)
chr3 (20-201)||(19666347-19666528)
[»] chr1 (8 HSPs)
chr1 (42-201)||(48584527-48584686)
chr1 (36-201)||(48628104-48628269)
chr1 (29-201)||(48618991-48619163)
chr1 (42-201)||(11546416-11546575)
chr1 (105-201)||(48655840-48655936)
chr1 (32-201)||(48660751-48660920)
chr1 (21-201)||(48652284-48652464)
chr1 (42-190)||(48666353-48666501)
[»] chr8 (2 HSPs)
chr8 (43-201)||(27227341-27227499)
chr8 (44-201)||(27223151-27223308)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 19666528 - 19666347
Alignment:
Q  20 gtgaatagtaatagtgccacggttcttaatgtcttccataaattcatcaaggttccgatcagaggaaccaccggtcgccaccgcttcctccgccgccttc 119  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  19666528 gtgaatattaatagtgccacggttcttaatgtcttccataaattcatcaagattccgatcagaggaaccaccggtcgccaccgcttcctccgccgctttc 19666429  T
Q  120 ttccacttgattgcattttgcttcaactcctctcctttttctcctattgttgcttccaataagcacttcttcacttcatctc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19666428 ttccacttgattgcattttgcttcaactcctctcctttttctcctattgttgcttccaataagcacttcttcacttcatctc 19666347  T

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Target: chr1 (Bit Score: 92; Significance: 7e-45; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 42 - 201
Target Start/End: Original strand, 48584527 - 48584686
Alignment:
Q  42 ttcttaatgtcttccataaattcatcaaggttccgatcagaggaaccaccggtcgccaccgcttcctccgccgccttcttccacttgattgcattttgct 141  Q
    |||||||||||||||||||| |||||||| |||||||||||||| |||||    ||||  ||||||||||||  ||||||||||||| ||||||||||||    
T  48584527 ttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttgtttgcattttgct 48584626  T
Q  142 tcaactcctctcctttttctcctattgttgcttccaataagcacttcttcacttcatctc 201  Q
    |||||| |||| ||||||| |||||||||||||||||||| ||||||||||| |||||||    
T  48584627 tcaacttctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctc 48584686  T

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Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 36 - 201
Target Start/End: Original strand, 48628104 - 48628269
Alignment:
Q  36 ccacggttcttaatgtcttccataaattcatcaaggttccgatcagaggaaccaccggtcgccaccgcttcctccgccgccttcttccacttgattgcat 135  Q
    ||||| || |||||||||||||||||| ||||||| |||| ||||||||| |||||    ||||| |||||||| ||| ||||||||||||| |||||||    
T  48628104 ccacgttttttaatgtcttccataaatgcatcaagattccaatcagaggatccaccaacggccactgcttcctctgcctccttcttccacttcattgcat 48628203  T
Q  136 tttgcttcaactcctctcctttttctcctattgttgcttccaataagcacttcttcacttcatctc 201  Q
    ||| ||||||||||||| ||||||| ||| |||||||||||||||||||||||||||| |||||||    
T  48628204 ttttcttcaactcctctgctttttcccctgttgttgcttccaataagcacttcttcacctcatctc 48628269  T

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Target: chr1; HSP #3
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 29 - 201
Target Start/End: Complemental strand, 48619163 - 48618991
Alignment:
Q  29 aatagtgccacggttcttaatgtcttccataaattcatcaaggttccgatcagaggaaccaccggtcgccaccgcttcctccgccgccttcttccacttg 128  Q
    |||| ||| |||||||| |||||||||||||||||||||||| |||||||||||||| |||||  | ||||| ||||| ||||||  ||||||||||||     
T  48619163 aatattgcaacggttctgaatgtcttccataaattcatcaagattccgatcagaggatccaccaatggccactgcttcatccgccttcttcttccacttc 48619064  T
Q  129 attgcattttgcttcaactcctctcctttttctcctattgttgcttccaataagcacttcttcacttcatctc 201  Q
    |||||||||| ||||||||||||| ||||||| ||| |||| ||||||||||| ||||| ||||| |||||||    
T  48619063 attgcatttttcttcaactcctctgctttttcccctgttgtagcttccaataaacactttttcacctcatctc 48618991  T

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Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 42 - 201
Target Start/End: Original strand, 11546416 - 11546575
Alignment:
Q  42 ttcttaatgtcttccataaattcatcaaggttccgatcagaggaaccaccggtcgccaccgcttcctccgccgccttcttccacttgattgcattttgct 141  Q
    |||||||||||||||| |||||||||||| |||||||||||||| |||||  | ||||| |||||||| |||   ||||||||||| |||||||||| ||    
T  11546416 ttcttaatgtcttccaaaaattcatcaagattccgatcagaggatccaccaatggccactgcttcctcagcctttttcttccactttattgcatttttct 11546515  T
Q  142 tcaactcctctcctttttctcctattgttgcttccaataagcacttcttcacttcatctc 201  Q
    |||| |||||  ||||||| |||||||||||||| ||||||||||| ||||| |||||||    
T  11546516 tcaaatcctcagctttttcccctattgttgcttctaataagcactttttcacctcatctc 11546575  T

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Target: chr1; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 105 - 201
Target Start/End: Original strand, 48655840 - 48655936
Alignment:
Q  105 tcctccgccgccttcttccacttgattgcattttgcttcaactcctctcctttttctcctattgttgcttccaataagcacttcttcacttcatctc 201  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||| ||| |||| |||||||| |||||||||||||| |||||||    
T  48655840 tcctccgctgccttcttccacttgattgcatttttcttcaactcctctgctttttcccctgttgtagcttccaacaagcacttcttcacctcatctc 48655936  T

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Target: chr1; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 32 - 201
Target Start/End: Original strand, 48660751 - 48660920
Alignment:
Q  32 agtgccacggttcttaatgtcttccataaattcatcaaggttccgatcagaggaaccaccggtcgccaccgcttcctccgccgccttcttccacttgatt 131  Q
    ||||||| | |||||||||||||  |||||| ||||||| |  || || ||||||||||||   |||| ||| ||||| || ||| |||||||||| |||    
T  48660751 agtgccatgtttcttaatgtcttggataaatgcatcaagatgtcggtccgaggaaccaccgactgccatcgcatcctctgctgccgtcttccacttcatt 48660850  T
Q  132 gcattttgcttcaactcctctcctttttctcctattgttgcttccaataagcacttcttcacttcatctc 201  Q
    |||||||| ||||||  |||| ||||||| ||| || ||||||||||||||||||||||||| |||||||    
T  48660851 gcattttgtttcaacctctctgctttttcccctgttattgcttccaataagcacttcttcacctcatctc 48660920  T

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Target: chr1; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 201
Target Start/End: Original strand, 48652284 - 48652464
Alignment:
Q  21 tgaatagtaatagtgccacggttcttaatgtcttccataaattcatcaaggttccgatcagaggaaccaccggtcgccaccgcttcctccgccgccttct 120  Q
    |||||| ||| ||||||||  || || ||||||| ||||||| ||||||| | | ||||||| || |||||  | || ||||| |||||||| || ||||    
T  48652284 tgaatattaacagtgccacattttttgatgtcttgcataaatgcatcaagatgcagatcagatgatccacctatggcaaccgcatcctccgctgctttct 48652383  T
Q  121 tccacttgattgcattttgcttcaactcctctcctttttctcctattgttgcttccaataagcacttcttcacttcatctc 201  Q
    |||||||||||||||||| ||||||||||||| ||||||| ||     |||||||||| |||||||||||||| |||||||    
T  48652384 tccacttgattgcatttttcttcaactcctctgctttttccccagccattgcttccaacaagcacttcttcacctcatctc 48652464  T

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Target: chr1; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 42 - 190
Target Start/End: Original strand, 48666353 - 48666501
Alignment:
Q  42 ttcttaatgtcttccataaattcatcaaggttccgatcagaggaaccaccggtcgccaccgcttcctccgccgccttcttccacttgattgcattttgct 141  Q
    ||||||||||||||||||||| ||||||| |  || || |||||||||||   |||||| ||||||||||||||||| ||| ||||| ||||||||| ||    
T  48666353 ttcttaatgtcttccataaatgcatcaagatgtcggtccgaggaaccaccaaccgccactgcttcctccgccgcctttttcaacttggttgcatttttct 48666452  T
Q  142 tcaactcctctcctttttctcctattgttgcttccaataagcacttctt 190  Q
    |||||  |||| ||||||| ||| ||||  ||||||||||||| |||||    
T  48666453 tcaacgtctctgctttttcccctgttgtaacttccaataagcatttctt 48666501  T

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Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 43 - 201
Target Start/End: Original strand, 27227341 - 27227499
Alignment:
Q  43 tcttaatgtcttccataaattcatcaaggttccgatcagaggaaccaccggtcgccaccgcttcctccgccgccttcttccacttgattgcattttgctt 142  Q
    |||||||||||||||||||| ||||||  | ||||||||||||||||||   ||| || ||  ||||||| |||||||||||||||||||  ||||||||    
T  27227341 tcttaatgtcttccataaatgcatcaatatgccgatcagaggaaccacctaccgcaactgcagcctccgctgccttcttccacttgattgtgttttgctt 27227440  T
Q  143 caactcctctcctttttctcctattgttgcttccaataagcacttcttcacttcatctc 201  Q
    ||||  |||| |||||   |||    |||||||||||||||| |||||||| |||||||    
T  27227441 caacatctctgcttttggccctgccattgcttccaataagcatttcttcacctcatctc 27227499  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 44 - 201
Target Start/End: Original strand, 27223151 - 27223308
Alignment:
Q  44 cttaatgtcttccataaattcatcaaggttccgatcagaggaaccaccggtcgccaccgcttcctccgccgccttcttccacttgattgcattttgcttc 143  Q
    ||||||||||||||||||| ||||||| |   |||||||||| |||||  | || || ||  |||| || |||||||||||||||||||| |||||||||    
T  27223151 cttaatgtcttccataaatgcatcaagatgttgatcagaggatccacctatggcaacagcagcctctgctgccttcttccacttgattgcgttttgcttc 27223250  T
Q  144 aactcctctcctttttctcctattgttgcttccaataagcacttcttcacttcatctc 201  Q
    ||||||||| |||||  ||||    |||||||  ||||||| |||||||| |||||||    
T  27223251 aactcctctgcttttggtcctgccattgcttctgataagcatttcttcacctcatctc 27223308  T

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