View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8731_low_5 (Length: 308)
Name: NF8731_low_5
Description: NF8731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8731_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 124; Significance: 9e-64; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 148 - 279
Target Start/End: Complemental strand, 24116038 - 24115907
Alignment:
| Q |
148 |
aacaagtttctggttgttattacttggtgacaagctaatatcatagtgttcatccgacatctatatctcttatctcttatacttcgtgcattgacttctt |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24116038 |
aacaagtttctggttgttattacttggtgacaagctaatataatagtgttcatccaacatctatatctcttatctcttatacttcgtgcattgacttctt |
24115939 |
T |
|
| Q |
248 |
gtattcaaagttgattggtaatagtgtttttt |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
24115938 |
gtattcaaagttgattggtaatagtgtttttt |
24115907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 24116392 - 24116296
Alignment:
| Q |
1 |
atttatatcgttttattttcaggaatctataaatattacctgaaacaaacacacttctggtctaagaaatgtcaattttgaactagattgcaaaaaa |
97 |
Q |
| |
|
|||| |||||||||||| ||||||||||| |||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24116392 |
atttctatcgttttattctcaggaatctacaaatataacctgaaacaaacacacctctagtctaagaaatgtcaattttgaactagattgcagaaaa |
24116296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 24116299 - 24116262
Alignment:
| Q |
111 |
aaaatgtcaatctggaatcgattttgagtgaggaacta |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24116299 |
aaaatgtcaatctggaatcgattttgagtgaggaacta |
24116262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 31806811 - 31806759
Alignment:
| Q |
1 |
atttatatcgttttattttcaggaatctataaatattacctgaaacaaacaca |
53 |
Q |
| |
|
|||| |||| ||||||| ||||||||||| |||||| || ||||||||||||| |
|
|
| T |
31806811 |
atttctatcattttattctcaggaatctacaaatataacttgaaacaaacaca |
31806759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 31598693 - 31598742
Alignment:
| Q |
1 |
atttatatcgttttattttcaggaatctataaatattacctgaaacaaac |
50 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||| || |||||||||| |
|
|
| T |
31598693 |
atttctatcgttttattttcaggaatctatgaatataacttgaaacaaac |
31598742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 43346940 - 43346897
Alignment:
| Q |
11 |
ttttattttcaggaatctataaatattacctgaaacaaacacac |
54 |
Q |
| |
|
||||||||||||||||||| |||||| || |||||||||||||| |
|
|
| T |
43346940 |
ttttattttcaggaatctacaaatataacttgaaacaaacacac |
43346897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 15200601 - 15200552
Alignment:
| Q |
1 |
atttatatcgttttattttcaggaatctataaatattacctgaaacaaac |
50 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||| || |||||||||| |
|
|
| T |
15200601 |
atttatatcattttattttcaaaaatctataaatataacttgaaacaaac |
15200552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 39819722 - 39819763
Alignment:
| Q |
11 |
ttttattttcaggaatctataaatattacctgaaacaaacac |
52 |
Q |
| |
|
||||||||||||||||||| |||||| || |||||||||||| |
|
|
| T |
39819722 |
ttttattttcaggaatctacaaatataacttgaaacaaacac |
39819763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University