View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8731_low_6 (Length: 273)

Name: NF8731_low_6
Description: NF8731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8731_low_6
NF8731_low_6
[»] chr7 (20 HSPs)
chr7 (18-254)||(22913853-22914080)
chr7 (18-129)||(22805494-22805605)
chr7 (18-129)||(22840237-22840348)
chr7 (18-129)||(22898448-22898559)
chr7 (18-121)||(22831216-22831319)
chr7 (18-129)||(22815212-22815323)
chr7 (18-124)||(22889477-22889583)
chr7 (18-71)||(22894129-22894182)
chr7 (21-129)||(22876104-22876212)
chr7 (18-129)||(22809829-22809940)
chr7 (156-247)||(22840366-22840457)
chr7 (18-129)||(22885777-22885888)
chr7 (159-254)||(22894261-22894356)
chr7 (156-254)||(22805623-22805721)
chr7 (156-254)||(22809958-22810056)
chr7 (156-254)||(22842478-22842576)
chr7 (156-254)||(22876230-22876328)
chr7 (18-122)||(22880749-22880853)
chr7 (156-254)||(22898577-22898675)
chr7 (84-124)||(22858670-22858710)
[»] chr1 (1 HSPs)
chr1 (18-122)||(21150425-21150529)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 22913853 - 22914080
Alignment:
Q  18 gaatttggtaaccattttgttggagaaagaacaaaaacaattccatggccactaagattaggaaactcagattttatggcaaaaacaaaagtagtagaga 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22913853 gaatttggtaacccttttgttggagaaagaacaaaaacaattccatggccactaagattaggaaactcagattttatggcaaaaacaaaagtagtagaga 22913952  T
Q  118 aagaagatacaccnnnnnnnnnnnnnnnnnntccattgttgaaaactatagggtttggatagaaagcatgacccttttgttgtcttgaatcattggttaa 217  Q
    |||||||||||                    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22913953 aagaagataca---------ttactactacttccattgttgaaaactatagggtttggatagaaagcatgacccttttgttgtcttgaatcattggttaa 22914043  T
Q  218 tcttagtaaaccatttgaggttaattcagcaacacca 254  Q
    |||||||||||||||||||||||||||||||||||||    
T  22914044 tcttagtaaaccatttgaggttaattcagcaacacca 22914080  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 22805494 - 22805605
Alignment:
Q  18 gaatttggtaaccattttgttggagaaagaacaaaaacaattccatggccactaagattaggaaactcagattttatggcaaaaacaaaagtagtagaga 117  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||| ||| |   ||| | | || | |||||||||| ||||||||||| ||||    
T  22805494 gaatttggtagcccttttgttggagaaagaacaaaaacaattccatggccagtaaaaggtggatattgaggtattatggcaaatacaaaagtagttgaga 22805593  T
Q  118 aagaagatacac 129  Q
    ||||||| ||||    
T  22805594 aagaagacacac 22805605  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 22840237 - 22840348
Alignment:
Q  18 gaatttggtaaccattttgttggagaaagaacaaaaacaattccatggccactaagattaggaaactcagattttatggcaaaaacaaaagtagtagaga 117  Q
    |||||||||| || |||||| ||||||| ||| |||||||||||||||||||||||| | ||| |   ||||||||||| ||| ||||||||||| ||||    
T  22840237 gaatttggtagcccttttgtaggagaaataacgaaaacaattccatggccactaagagttggatatgaagattttatggaaaatacaaaagtagttgaga 22840336  T
Q  118 aagaagatacac 129  Q
    ||||||| ||||    
T  22840337 aagaagaaacac 22840348  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 22898448 - 22898559
Alignment:
Q  18 gaatttggtaaccattttgttggagaaagaacaaaaacaattccatggccactaagattaggaaactcagattttatggcaaaaacaaaagtagtagaga 117  Q
    |||||||||| || |||||| ||||| | |||||||||||||||||||||||||||| | ||| | | || | |||||||||| ||||||||||| ||||    
T  22898448 gaatttggtagcccttttgtaggagagacaacaaaaacaattccatggccactaagagttggatattgaggtcttatggcaaacacaaaagtagttgaga 22898547  T
Q  118 aagaagatacac 129  Q
    ||||||| ||||    
T  22898548 aagaagaaacac 22898559  T

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Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 22831216 - 22831319
Alignment:
Q  18 gaatttggtaaccattttgttggagaaagaacaaaaacaattccatggccactaagattaggaaactcagattttatggcaaaaacaaaagtagtagaga 117  Q
    |||||||||| || |||||| |||||||||||||||||||||||||||||||||| |   ||| ||   |||||||||| ||| ||||||||||| ||||    
T  22831216 gaatttggtagcccttttgtaggagaaagaacaaaaacaattccatggccactaatagatggatacatggattttatggtaaatacaaaagtagttgaga 22831315  T
Q  118 aaga 121  Q
    ||||    
T  22831316 aaga 22831319  T

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Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 22815212 - 22815323
Alignment:
Q  18 gaatttggtaaccattttgttggagaaagaacaaaaacaattccatggccactaagattaggaaactcagattttatggcaaaaacaaaagtagtagaga 117  Q
    |||||||||| || |||||| ||||||||||||||||||||||| |||||||||| |   ||| | | || | |||| ||||| ||||||||||| ||||    
T  22815212 gaatttggtagcccttttgtaggagaaagaacaaaaacaattccttggccactaaaaggtggatattgaggtcttattgcaaacacaaaagtagttgaga 22815311  T
Q  118 aagaagatacac 129  Q
    ||||||| ||||    
T  22815312 aagaagacacac 22815323  T

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Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 22889477 - 22889583
Alignment:
Q  18 gaatttggtaaccattttgttggagaaagaacaaaaacaattccatggccactaagattaggaaactcagattttatggcaaaaacaaaagtagtagaga 117  Q
    |||| ||||| || |||||||||||||| ||||||||||||||||||||||| || ||| | | | | || | |||||||||| | ||||||||| ||||    
T  22889477 gaatctggtagcccttttgttggagaaataacaaaaacaattccatggccaccaatatttgcatattgaggtattatggcaaataaaaaagtagttgaga 22889576  T
Q  118 aagaaga 124  Q
    |||||||    
T  22889577 aagaaga 22889583  T

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Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 22894129 - 22894182
Alignment:
Q  18 gaatttggtaaccattttgttggagaaagaacaaaaacaattccatggccacta 71  Q
    |||||||||| || |||||| |||||||||||||||||||||||||||||||||    
T  22894129 gaatttggtagcccttttgtaggagaaagaacaaaaacaattccatggccacta 22894182  T

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Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 22876104 - 22876212
Alignment:
Q  21 tttggtaaccattttgttggagaaagaacaaaaacaattccatggccactaagattaggaaactcagattttatggcaaaaacaaaagtagtagagaaag 120  Q
    ||||||| || |||||| ||||||| |||||||||||||||||  ||||||| | | ||| | | || | |||||||||| ||||||||||| |||||||    
T  22876104 tttggtagcccttttgtaggagaaacaacaaaaacaattccatcaccactaatagttggatattgaggtcttatggcaaatacaaaagtagttgagaaag 22876203  T
Q  121 aagatacac 129  Q
    |||| ||||    
T  22876204 aagacacac 22876212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 22809829 - 22809940
Alignment:
Q  18 gaatttggtaaccattttgttggagaaagaacaaaaacaattccatggccactaagattaggaaactcagattttatggcaaaaacaaaagtagtagaga 117  Q
    |||||||| | || |||||| || |||| |||||| ||||||||||||  ||||||| | ||| | | || | |||||||||| ||||||||||| ||||    
T  22809829 gaatttggcagcccttttgtaggtgaaacaacaaatacaattccatgggaactaagagttggatattgaggtcttatggcaaatacaaaagtagttgaga 22809928  T
Q  118 aagaagatacac 129  Q
    ||||||||||||    
T  22809929 aagaagatacac 22809940  T

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Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 22840366 - 22840457
Alignment:
Q  156 ttgaaaactatagggtttggatagaaagcatgacccttttgttgtcttgaatcattggttaatcttagtaaaccatttgaggttaattcagc 247  Q
    |||||||||||||| |||||||||||||| || || |||| |||| ||| ||||||||| | ||||||||| ||| |||||| ||| |||||    
T  22840366 ttgaaaactataggatttggatagaaagcttgtcctttttcttgttttgtatcattggtgagtcttagtaagccagttgaggctaactcagc 22840457  T

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Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 22885777 - 22885888
Alignment:
Q  18 gaatttggtaaccattttgttggagaaagaacaaaaacaattccatggccactaagattaggaaactcagattttatggcaaaaacaaaagtagtagaga 117  Q
    |||||||||| || |||||| || |||| ||||||||||||||||||||||||| || | ||| | | ||||||||| ||||| | | || |||| ||||    
T  22885777 gaatttggtagcccttttgtaggtgaaataacaaaaacaattccatggccactatgagttggatattaagattttatagcaaataaagaattagttgaga 22885876  T
Q  118 aagaagatacac 129  Q
    ||||||| ||||    
T  22885877 aagaagacacac 22885888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 254
Target Start/End: Original strand, 22894261 - 22894356
Alignment:
Q  159 aaaactatagggtttggatagaaagcatgacccttttgttgtcttgaatcattggttaatcttagtaaaccatttgaggttaattcagcaacacca 254  Q
    |||||||||||||||||||||||||||||  | |||| |||| | |  |||||||| | ||||||||| ||||| |||||||| | ||||| ||||    
T  22894261 aaaactatagggtttggatagaaagcatgtgctttttcttgtttggtgtcattggtgagtcttagtaagccattggaggttaaattagcaatacca 22894356  T

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Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 254
Target Start/End: Original strand, 22805623 - 22805721
Alignment:
Q  156 ttgaaaactatagggtttggatagaaagcatgacccttttgttgtcttgaatcattggttaatcttagtaaaccatttgaggttaattcagcaacacca 254  Q
    ||||||||||| || ||||||||||||||||||||  ||  ||||  || ||||||||| | ||||||||  |||| ||||||||| ||||||| ||||    
T  22805623 ttgaaaactattggatttggatagaaagcatgacctattacttgttctgtatcattggtgagtcttagtatgccatctgaggttaactcagcaaaacca 22805721  T

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Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 254
Target Start/End: Original strand, 22809958 - 22810056
Alignment:
Q  156 ttgaaaactatagggtttggatagaaagcatgacccttttgttgtcttgaatcattggttaatcttagtaaaccatttgaggttaattcagcaacacca 254  Q
    |||||||||| ||| ||||||||||||||||| || ||||  |||  || ||||||||| | ||||||||| |||| || |||||| ||||||| ||||    
T  22809958 ttgaaaactacaggatttggatagaaagcatgtcctttttcatgttctgtatcattggtgagtcttagtaagccatctggggttaactcagcaatacca 22810056  T

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Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 254
Target Start/End: Original strand, 22842478 - 22842576
Alignment:
Q  156 ttgaaaactatagggtttggatagaaagcatgacccttttgttgtcttgaatcattggttaatcttagtaaaccatttgaggttaattcagcaacacca 254  Q
    ||||||||||| || |||||||| ||||||||||| || | |||| ||| ||||||||| | |||| |||| |||  ||||||||| ||||||| ||||    
T  22842478 ttgaaaactattggttttggatataaagcatgacctttgtattgttttgtatcattggtgagtcttggtaagccacctgaggttaactcagcaatacca 22842576  T

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Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 254
Target Start/End: Original strand, 22876230 - 22876328
Alignment:
Q  156 ttgaaaactatagggtttggatagaaagcatgacccttttgttgtcttgaatcattggttaatcttagtaaaccatttgaggttaattcagcaacacca 254  Q
    |||||||||||||| |||||||||||| |||| || ||||  | |  || ||||||||| | | ||||||| |||||||||||||| ||||||| ||||    
T  22876230 ttgaaaactataggatttggatagaaaccatgtcctttttcatattctgtatcattggtgagttttagtaagccatttgaggttaactcagcaatacca 22876328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 22880749 - 22880853
Alignment:
Q  18 gaatttggtaaccattttgttggagaaagaacaaaaacaattccatggccactaagattaggaaactcagattttatggcaaaaacaaaagtagtagaga 117  Q
    |||||||||| || ||||||||| |||| ||||||||||| ||||||||||| |  |   | | ||  |||||| |||||||| ||||||||||| ||||    
T  22880749 gaatttggtagcccttttgttggtgaaacaacaaaaacaagtccatggccacaagtagctgtatacctagatttgatggcaaatacaaaagtagttgaga 22880848  T
Q  118 aagaa 122  Q
    |||||    
T  22880849 aagaa 22880853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 254
Target Start/End: Original strand, 22898577 - 22898675
Alignment:
Q  156 ttgaaaactatagggtttggatagaaagcatgacccttttgttgtcttgaatcattggttaatcttagtaaaccatttgaggttaattcagcaacacca 254  Q
    |||||||||||||| |||||||||||||||||  | |||| |||  | | ||||||||| | ||| ||||| ||||| |||||||| | ||||| ||||    
T  22898577 ttgaaaactataggatttggatagaaagcatgtgctttttcttgcttggtatcattggtgagtctaagtaagccattggaggttaaattagcaatacca 22898675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 22858670 - 22858710
Alignment:
Q  84 tcagattttatggcaaaaacaaaagtagtagagaaagaaga 124  Q
    ||||||||||||||||| | ||||||||| |||||||||||    
T  22858670 tcagattttatggcaaataaaaaagtagttgagaaagaaga 22858710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 21150529 - 21150425
Alignment:
Q  18 gaatttggtaaccattttgttggagaaagaacaaaaacaattccatggccactaagattaggaaactcagattttatggcaaaaacaaaagtagtagaga 117  Q
    |||||||||| |  |||||| ||||||| ||||||||||||||||||||||| |||| | ||| | | || | |||||||||| ||||||||||| || |    
T  21150529 gaatttggtagctcttttgtaggagaaataacaaaaacaattccatggccaccaagagttggatattgaggtcttatggcaaatacaaaagtagttgaaa 21150430  T
Q  118 aagaa 122  Q
    |||||    
T  21150429 aagaa 21150425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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