View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8731_low_9 (Length: 236)

Name: NF8731_low_9
Description: NF8731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8731_low_9
NF8731_low_9
[»] scaffold0036 (1 HSPs)
scaffold0036 (16-190)||(98019-98193)
[»] chr5 (1 HSPs)
chr5 (52-190)||(29352253-29352391)
[»] chr1 (2 HSPs)
chr1 (16-123)||(19769188-19769295)
chr1 (16-99)||(45117976-45118059)
[»] scaffold0004 (1 HSPs)
scaffold0004 (16-91)||(246426-246501)
[»] chr2 (2 HSPs)
chr2 (16-99)||(2986005-2986088)
chr2 (19-65)||(10495996-10496042)
[»] chr4 (3 HSPs)
chr4 (16-65)||(44161953-44162002)
chr4 (16-99)||(26720865-26720948)
chr4 (31-99)||(8541360-8541428)
[»] chr3 (1 HSPs)
chr3 (118-190)||(5561193-5561266)
[»] chr8 (2 HSPs)
chr8 (31-99)||(23820695-23820763)
chr8 (31-99)||(40172843-40172911)


Alignment Details
Target: scaffold0036 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 98193 - 98019
Alignment:
Q  16 ttggtgttgaatgaacgggaagcggaagaggcaacgggacggagagacctggagaggttgctggaggagaaaattcactgctgaattcgccggcccagac 115  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||  ||  |||||||||||||||||||||||||||||||| ||||    
T  98193 ttggtgttgaatgaacgggaagcggaagaggcaacgggacagagagacctagagaggaggccagaggagaaaattcactgctgaattcgccggcctagac 98094  T
Q  116 gctttcgaatcaaaattttatggtcactcaacgacatagagaagatggtgagatggggaaggctgtggttgattt 190  Q
    |||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  98093 gctttcgaatcaaaatttcatggtcactcaacgacataaaggagatggtgagatggggaaggctgtggttgattt 98019  T

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Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 52 - 190
Target Start/End: Complemental strand, 29352391 - 29352253
Alignment:
Q  52 ggacggagagacctggagaggttgctggaggagaaaattcactgctgaattcgccggcccagacgctttcgaatcaaaattttatggtcactcaacgaca 151  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29352391 ggacggagagacctagagaggttgctggaggagaaaattcactgctgaattcgccggcccagacgctttcgaatcaaaattttatggtcactcaacgaca 29352292  T
Q  152 tagagaagatggtgagatggggaaggctgtggttgattt 190  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  29352291 tagagaagatggtgagatggggaagactgtggttgattt 29352253  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 19769295 - 19769188
Alignment:
Q  16 ttggtgttgaatgaacgggaagcggaagaggcaacgggacggagagacctggagaggttgctggaggagaaaattcactgctgaattcgccggcccagac 115  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||  || |||||||||||||||| ||||||| |||||||| |||     
T  19769295 ttggtgttgaatgaacgggaagcggaagaggcaacgggaaggagagacctagagaggaggccggaggagaaaattcacagctgaatccgccggcctagaa 19769196  T
Q  116 gctttcga 123  Q
    ||| ||||    
T  19769195 gctctcga 19769188  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 45117976 - 45118059
Alignment:
Q  16 ttggtgttgaatgaacgggaagcggaagaggcaacgggacggagagacctggagaggttgctggaggagaaaattcactgctga 99  Q
    |||||||||||||||||||||||| |||||||||||||| | |||||||| ||||||  |||| |||||||||||||| |||||    
T  45117976 ttggtgttgaatgaacgggaagcgaaagaggcaacgggatgaagagacctagagaggaggctgcaggagaaaattcaccgctga 45118059  T

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Target: scaffold0004 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 246501 - 246426
Alignment:
Q  16 ttggtgttgaatgaacgggaagcggaagaggcaacgggacggagagacctggagaggttgctggaggagaaaattc 91  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||  |||||||||||||    
T  246501 ttggtgttgaatgaacgggaagcggaagaggcaacaggacggagagacctggagaggaggcctgaggagaaaattc 246426  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 2986088 - 2986005
Alignment:
Q  16 ttggtgttgaatgaacgggaagcggaagaggcaacgggacggagagacctggagaggttgctggaggagaaaattcactgctga 99  Q
    |||||||||||||||||||||||| |||||||||||||| | |||||||| ||||||  || | |||||||||||||| |||||    
T  2986088 ttggtgttgaatgaacgggaagcgaaagaggcaacgggatgaagagacctagagaggaggcagcaggagaaaattcaccgctga 2986005  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 10495996 - 10496042
Alignment:
Q  19 gtgttgaatgaacgggaagcggaagaggcaacgggacggagagacct 65  Q
    |||||||||||||||||| | |||||||||||||||  |||||||||    
T  10495996 gtgttgaatgaacgggaaacagaagaggcaacgggatagagagacct 10496042  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 44162002 - 44161953
Alignment:
Q  16 ttggtgttgaatgaacgggaagcggaagaggcaacgggacggagagacct 65  Q
    ||||||||||||||||||||||||||||| ||||||||||  ||||||||    
T  44162002 ttggtgttgaatgaacgggaagcggaagaagcaacgggacatagagacct 44161953  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 26720948 - 26720865
Alignment:
Q  16 ttggtgttgaatgaacgggaagcggaagaggcaacgggacggagagacctggagaggttgctggaggagaaaattcactgctga 99  Q
    ||||||||||||||||||||| |  |||||||||||||| | |||||||| ||||||| |  | | ||||||||||||| ||||    
T  26720948 ttggtgttgaatgaacgggaatcaaaagaggcaacgggatgaagagacctagagaggtggtcgcaagagaaaattcactactga 26720865  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 8541428 - 8541360
Alignment:
Q  31 cgggaagcggaagaggcaacgggacggagagacctggagaggttgctggaggagaaaattcactgctga 99  Q
    |||||| ||||||||||||| ||||||||||| || ||||||  || | |||||||||| ||| |||||    
T  8541428 cgggaaacggaagaggcaactggacggagagagctagagaggaggccgcaggagaaaatccaccgctga 8541360  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 5561266 - 5561193
Alignment:
Q  118 tttcgaatcaaaattttatggtcactcaacgacatagagaagatggtgagatg-gggaaggctgtggttgattt 190  Q
    |||||||||||||||| ||| ||||||||| | |||||| ||||||||||||| |||||||  |||||||||||    
T  5561266 tttcgaatcaaaatttcatgttcactcaacaagatagaggagatggtgagatgagggaaggaggtggttgattt 5561193  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 23820763 - 23820695
Alignment:
Q  31 cgggaagcggaagaggcaacgggacggagagacctggagaggttgctggaggagaaaattcactgctga 99  Q
    |||||| ||||||||||||| ||||||||||| || ||||||  || | |||||||||| ||| |||||    
T  23820763 cgggaaacggaagaggcaactggacggagagagctagagaggaggccgcaggagaaaatccaccgctga 23820695  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 40172843 - 40172911
Alignment:
Q  31 cgggaagcggaagaggcaacgggacggagagacctggagaggttgctggaggagaaaattcactgctga 99  Q
    |||||| ||||||||||||| ||||||||||| || ||||||  || | |||||||||| ||| |||||    
T  40172843 cgggaaacggaagaggcaactggacggagagagctagagaggaggccgcaggagaaaatccaccgctga 40172911  T

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