View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8732_10 (Length: 360)
Name: NF8732_10
Description: NF8732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8732_10 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 11 - 214
Target Start/End: Complemental strand, 38956303 - 38956101
Alignment:
| Q |
11 |
cagagagcgacactatgaaattatataatttcattc-atacatacatatctacatcactctcttaaatagacatgtacaaaaccaaaccaaagtcaccaa |
109 |
Q |
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| T |
38956303 |
cagagagtgacactatgaaattata--atttcatcatatacatacatatctacatcactctcttaaatagacatgtacaaaaccaaaccaaagtcaccaa |
38956206 |
T |
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| Q |
110 |
catttaaaaattaaaacagaaactgaaatttcctattataggcatcaaaaagcagtacaaaaatatgggaatatctagtgtacagagacatcttgtgatt |
209 |
Q |
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| T |
38956205 |
catttaaaaattaaatcagaaactgaaatttcctattataggcatcagaaaacagtacaaaaaaatgggaatatctagtgtacagagacatcttgtgatt |
38956106 |
T |
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| Q |
210 |
aaatt |
214 |
Q |
| |
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||||| |
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| T |
38956105 |
aaatt |
38956101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 206 - 360
Target Start/End: Complemental strand, 38955702 - 38955549
Alignment:
| Q |
206 |
gattaaattactagtgcagaagcaaatcatatcatatatnnnnnnnnctaaaagttgaaatgggtttcaagtaaacaatgcatattcaaggatgctaaac |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38955702 |
gattaaattactagtgcagaagcaaatcatatcatatataaaaaaaactaaaagttgaaatgggtttcaagtaaacaatgcatatt-aaggatgctaaac |
38955604 |
T |
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| Q |
306 |
aaatcaaaaaagaaaatgagatgcaatacaacacatcacaataaaatcacctacc |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38955603 |
aaatcaaaaaagaaaatgagatgcaatacaacacatcacaataaaatcacctacc |
38955549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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