View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8732_2 (Length: 833)
Name: NF8732_2
Description: NF8732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8732_2 |
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Alignment Details
Target: chr5 (Bit Score: 745; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 745; E-Value: 0
Query Start/End: Original strand, 27 - 805
Target Start/End: Original strand, 2573851 - 2574627
Alignment:
| Q |
27 |
agtaaccaaggttggagtcaagcagtgtctgaatttagctgggataacaaatttgttggagctcaaacattactaacacaggtattcatatttatagcta |
126 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2573851 |
agtaaccaaggttggagtcaagcagtgtctgaatttagctgggataacaaatttgttggagctcaaacattactaacacaggtattcatatttatagtta |
2573950 |
T |
|
| Q |
127 |
aaccattgactaccatatagcaaaactgtattctttagtaaacattagttcaaaggaaaaaattaactaattaattctaattgttttcctttcatctttt |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2573951 |
aaccattgactaccatatagcaaaactgtattctttagtaaacattagttcaaaggaaaaaattaactaattaattctaattgttttcctttcatctttt |
2574050 |
T |
|
| Q |
227 |
gtcaaggaattttatggcgggagggaagagttagccaagtttcagactgatgctgaatcatttatatgtgcattgatgccaggaagtagctctctacaaa |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2574051 |
gtcaaggaattttatggcgggagggaagagttagccaagtttcagactgatgctgaatcatttatatgtgcattgatgccaggaagtagctctctacaaa |
2574150 |
T |
|
| Q |
327 |
ttaaaacaactccaggtatacatatagactatatttaatgattgcaaagtaatagtacatttaacatatgatggaatgagctcatttagtttattattta |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2574151 |
ttaaaacaactccaggtatacatatagactatatttaatgattgcaaagtaatagtacatttaacatatgattgaatgagctcatttagtttattattta |
2574250 |
T |
|
| Q |
427 |
ttgttaactcaggtgggcttctgtatattagagatagcagtaatttgcaatataccacaacctcaaccatggtactattcattttctccaaaatcttaaa |
526 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2574251 |
ttgttaactcaggtgggcttctgtatattagagatagcagtaatttgcaatataccacaacctcaaccatggtactattcattttctccaaaatcttaaa |
2574350 |
T |
|
| Q |
527 |
caaaaaccatattgatggaatacactgtggctctgcccatttttcaccctctgagattagagcctttgcaaaattacaggtatatatacatacttatcta |
626 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
2574351 |
caaaaaccatattgatggaatacactgtggctctgcccatttttcaccctctgagattagagcctttgcaaaattacaggtatat----atacttatcta |
2574446 |
T |
|
| Q |
627 |
attttacttcacaaatattaagctcatttattaattttcttaattttggttcatgactaaaagttgaatgtgtac--attacataggtggactacatact |
724 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2574447 |
attttacttcacaaatattaagctcatttattaattttcttaattttggttcatgactaaaagttgaatgtgtacatattacataggtggactacatact |
2574546 |
T |
|
| Q |
725 |
aggaaacaatcccatgaagatgtcatatatggtgggatatgggagtaaatatccaaaacaattacatcacagaggttcttc |
805 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2574547 |
aggaaacaatcccatgaagatgtcatatatggtgggatatgggagtaaatatccaaaacaattacatcacagaggttcttc |
2574627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 682 - 805
Target Start/End: Original strand, 2564610 - 2564733
Alignment:
| Q |
682 |
actaaaagttgaatgtgtacattacataggtggactacatactaggaaacaatcccatgaagatgtcatatatggtgggatatgggagtaaatatccaaa |
781 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
2564610 |
actaaaaattgaatgtgtacataacataggtggactacatactaggtaacaatcccatgaagatgtcatacatggtgggatatggaagtaaatatccaaa |
2564709 |
T |
|
| Q |
782 |
acaattacatcacagaggttcttc |
805 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
2564710 |
gcaattacatcacagaggttcttc |
2564733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 424 - 609
Target Start/End: Original strand, 2564353 - 2564538
Alignment:
| Q |
424 |
ttattgttaactcaggtgggcttctgtatattagagatagcagtaatttgcaatataccacaacctcaaccatggtactattcattttctccaaaatctt |
523 |
Q |
| |
|
||||| ||||||||||||| ||| |||||| ||||||||| | |||||||||||| ||||| |||||||||||||||||||||||||||||||||||| | |
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|
| T |
2564353 |
ttattattaactcaggtggacttttgtatactagagatagtaataatttgcaatacaccacgacctcaaccatggtactattcattttctccaaaatcct |
2564452 |
T |
|
| Q |
524 |
aaacaaaaaccatattgatggaatacactgtggctctgcccatttttcaccctctgagattagagcctttgcaaaattacaggtat |
609 |
Q |
| |
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||||||||| ||||||||||||| || ||||||||| || |||| | ||||||| |||| |||||||||||||| |||||||| |
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| T |
2564453 |
aaacaaaaataatattgatggaattcattgtggctctaccaatttcacctcctctgaaattaaagcctttgcaaaatcacaggtat |
2564538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 2564003 - 2564094
Alignment:
| Q |
29 |
taaccaaggttggagtcaagcagtgtctgaatttagctgggataacaaatttgttggagctcaaacattactaacacaggtattcatattta |
120 |
Q |
| |
|
|||||||||||||| ||| |||| |||||| || ||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||| |
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|
| T |
2564003 |
taaccaaggttggaatcaggcagcgtctgagttcagctgggataacaaatttgttggagttcaaacattactaacacaggtctttatattta |
2564094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 231 - 346
Target Start/End: Original strand, 2564173 - 2564288
Alignment:
| Q |
231 |
aggaattttatggcgggagggaagagttagccaagtttcagactgatgctgaatcatttatatgtgcattgatgccaggaagtagctctctacaaattaa |
330 |
Q |
| |
|
||||||| ||||| |||| | | || ||||| ||| |||| | ||||| |||||||||||||||||| ||||||| ||||||| ||||||||| ||||| |
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| T |
2564173 |
aggaattctatggtgggaagaaggacttagcaaagattcatagtgatggtgaatcatttatatgtgctttgatgcaaggaagttactctctacagattaa |
2564272 |
T |
|
| Q |
331 |
aacaactccaggtata |
346 |
Q |
| |
|
|| ||| || |||||| |
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|
| T |
2564273 |
aaaaacacctggtata |
2564288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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