View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8732_3 (Length: 819)
Name: NF8732_3
Description: NF8732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8732_3 |
 | |
|
| [»] scaffold0042 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 704; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 704; E-Value: 0
Query Start/End: Original strand, 1 - 804
Target Start/End: Complemental strand, 18480976 - 18480173
Alignment:
| Q |
1 |
taccatattcagagagtcggaaaaggaggcatcaatattacatttgtacctaccatatatcggcttcgtccacttgatgacaagagcatgaataacacta |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| || |||||||||||||| |
|
|
| T |
18480976 |
taccatattcagagagtcagaaaaggaggcatcaatattacatttgtacctaccatataccggcttcgtccactcgatgacaggaccatgaataacacta |
18480877 |
T |
|
| Q |
101 |
ttcggctgagcaaggatgtccgtagctttgtgtgatatgacttcttgggcggttctccaatcatctaagaggtgtcgggcccgttcaacaacctgtagac |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18480876 |
ttcggctgagcaaggatgtctgtagctttgtgtgatatgacttcttgggcggttctccaatcatctaagaggtgtcgggcccattcaacaacctgtagac |
18480777 |
T |
|
| Q |
201 |
atgtttcattttgttgttgccacaatttgaaattcctgcgcttccacaagctccacatgatcgtcacaaacaattctttttgcgcagaaggcagctggtc |
300 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
18480776 |
atgtttcatttcgttgttgccacaattttaaattcctgcgcttccacaagctccacatgatcgtcacaaacaattctttttgcacagaaggcagttggtc |
18480677 |
T |
|
| Q |
301 |
aagaagagaaaatatcaaagcatccatgttataatttcgacggagagttctatcaataatatcccataaattaacctcccgccacgcttgcatcgcacct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18480676 |
aagaagagaaaatatcaaagcatccatgttataatttcgacgaagagttctatcaataatatcccataaattaacctcccgccacgcttgcatcgcacct |
18480577 |
T |
|
| Q |
401 |
ggacattctaacaagacatgaatactatcttcataattagttccacacaagacacaattattaggacaatgaataccacgactacttaggcatgcacgtg |
500 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18480576 |
ggactttctaacaagacatgaatactatcttcataattagttccacacaagacacaatcattaggacaatgaataccacgactacttaggcgtgcacgtg |
18480477 |
T |
|
| Q |
501 |
taggcaaacagccccgacacacacgccaaacaaagtttcgaatcttgggaggaaccttaagcttccatatcgaactccacttccccggaacatgcaaatg |
600 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18480476 |
tagggaaacagccccgacacacacgccaaacaaagtttcgaatcttgggaggaaccttaagcttccatatcaaactccacttccccggaacatgcaaatg |
18480377 |
T |
|
| Q |
601 |
agagttatctgcaatttctgtaatacaaattcgatatgcactacgaacagaataactaccatttttctcagtcttccaaataattttatcttcatgaaca |
700 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18480376 |
agagttatctgcaatttttgtaacacaaattcgatatgcactacgaacagaataactatcatttttctcagccttccaaataattttatcttcatgaaca |
18480277 |
T |
|
| Q |
701 |
agaggatggagaggagtattcaaaataagctgggaagtattatgatcaaacaaattagaaattaaagtagcattccaaacctttgtcgatgttttgatga |
800 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||| |
|
|
| T |
18480276 |
agaggatagagaggagtattcaaaataagctgggaagtattatgatcaaacaaattagaaattaaagtagcattcgaaacctttgtcgatggttcgatga |
18480177 |
T |
|
| Q |
801 |
tgtc |
804 |
Q |
| |
|
|||| |
|
|
| T |
18480176 |
tgtc |
18480173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 203 - 357
Target Start/End: Complemental strand, 7250648 - 7250494
Alignment:
| Q |
203 |
gtttcattttgttgttgccacaatttgaaattcctgcgcttccacaagctccacatgatcgtcacaaacaattctttttgcgcagaaggcagctggtcaa |
302 |
Q |
| |
|
||||||||||| || ||||||||||| |||||||| |||||||||| |||||||| ||||||||||| || ||| |||| | |||||||||| |||| |
|
|
| T |
7250648 |
gtttcattttgctgctgccacaatttcaaattcctacgcttccacatactccacataatcgtcacaaataactctctttggaccaaaggcagctgatcaa |
7250549 |
T |
|
| Q |
303 |
gaagagaaaatatcaaagcatccatgttataatttcgacggagagttctatcaat |
357 |
Q |
| |
|
|||||| ||| || | |||||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
7250548 |
gaagagtaaaaataagtgcatccatattataattttttcggagagttctgtcaat |
7250494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 210 - 432
Target Start/End: Complemental strand, 26440341 - 26440119
Alignment:
| Q |
210 |
tttgttgttgccacaatttgaaattcctgcgcttccacaagctccacatgatcgtcacaaacaattctttttgcgcagaaggcagctggtcaagaagaga |
309 |
Q |
| |
|
||||||||||||| ||||||| | ||||||||||||| || || ||||| || |||||| | |||| |||||| | ||| |||||| |||| ||| | |
|
|
| T |
26440341 |
tttgttgttgccataatttgagaatcctgcgcttccataaacttcacataattgtcacagataattttttttgtactaaagacagctgatcaataagtgt |
26440242 |
T |
|
| Q |
310 |
aaatatcaaagcatccatgttataatttcgacggagagttctatcaataatatcccataaattaacctcccgccacgcttgcatcgcacctggacattct |
409 |
Q |
| |
|
||| |||||||||||||| ||||||||| || || ||| | || || ||||||||||| | ||| || || || || ||| || |||||||||||| |
|
|
| T |
26440241 |
aaaaatcaaagcatccatattataattttttcgaagtgttatgtctattatatcccataactaaacttcacgtcatgcctgctgtgcgcctggacattct |
26440142 |
T |
|
| Q |
410 |
aacaagacatgaatactatcttc |
432 |
Q |
| |
|
|| || ||||||||||||||||| |
|
|
| T |
26440141 |
aataacacatgaatactatcttc |
26440119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 589 - 642
Target Start/End: Original strand, 21277342 - 21277395
Alignment:
| Q |
589 |
aacatgcaaatgagagttatctgcaatttctgtaatacaaattcgatatgcact |
642 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||| ||| ||||| |
|
|
| T |
21277342 |
aacatgcatatgagagttatctgcaatttctgtaacacaaattctataagcact |
21277395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 309 - 439
Target Start/End: Complemental strand, 13419493 - 13419363
Alignment:
| Q |
309 |
aaaatatcaaagcatccatgttataatttcgacggagagttctatcaataatatcccataaattaacctcccgccacgcttgcatcgcacctggacattc |
408 |
Q |
| |
|
|||| |||| ||||||||| ||||||||| | ||||||||||||||||| |||||||||| | | || ||| | ||||| | | | | ||||||| |
|
|
| T |
13419493 |
aaaaaatcagagcatccatattataattttggcggagagttctatcaatcgtatcccataagtgttcatcacgctaagcttgaacaacccatagacattc |
13419394 |
T |
|
| Q |
409 |
taacaagacatgaatactatcttcataatta |
439 |
Q |
| |
|
||||| |||||||||||||||||||||||| |
|
|
| T |
13419393 |
caacaacacatgaatactatcttcataatta |
13419363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 700; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 700; E-Value: 0
Query Start/End: Original strand, 1 - 804
Target Start/End: Original strand, 11351965 - 11352768
Alignment:
| Q |
1 |
taccatattcagagagtcggaaaaggaggcatcaatattacatttgtacctaccatatatcggcttcgtccacttgatgacaagagcatgaataacacta |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
11351965 |
taccatattcagagagtcagaaaaggaggcatcaatattacatttgtacctaccatataccggcttcgtccacttgatgacaggaccatgaataacacta |
11352064 |
T |
|
| Q |
101 |
ttcggctgagcaaggatgtccgtagctttgtgtgatatgacttcttgggcggttctccaatcatctaagaggtgtcgggcccgttcaacaacctgtagac |
200 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11352065 |
ttctgctgagcaaggatgtctgtagctttgtgtgatatgacttcttgggcggttctccaatcatctaagaggtgtcgggcccgttcaacaacctgtagac |
11352164 |
T |
|
| Q |
201 |
atgtttcattttgttgttgccacaatttgaaattcctgcgcttccacaagctccacatgatcgtcacaaacaattctttttgcgcagaaggcagctggtc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11352165 |
atgtttcattttgttgttgccacaattttaaattattgcgcttccacaagctccacatgatcgtcacaaacaattctttttgcgcagaaggcagctggtc |
11352264 |
T |
|
| Q |
301 |
aagaagagaaaatatcaaagcatccatgttataatttcgacggagagttctatcaataatatcccataaattaacctcccgccacgcttgcatcgcacct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11352265 |
aagaagagaaaatatcaaagcatccatgttataatttcgacggagagttctatcaataatatctcataaattaacctcccgccacgcttgcatcgcacct |
11352364 |
T |
|
| Q |
401 |
ggacattctaacaagacatgaatactatcttcataattagttccacacaagacacaattattaggacaatgaataccacgactacttaggcatgcacgtg |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
11352365 |
ggacattctaacaagacatgaatactatcttcataattagttccacacaagacacgatcattaggacaatgaataccacgactacttagacgtgcacgtg |
11352464 |
T |
|
| Q |
501 |
taggcaaacagccccgacacacacgccaaacaaagtttcgaatcttgggaggaaccttaagcttccatatcgaactccacttccccggaacatgcaaatg |
600 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11352465 |
tagggaaacagccccgacacacacgccaaacaaagtttcgaatcttgggaggaatcttaagcttccatatcgaactccacttccacggaacatgcaaatg |
11352564 |
T |
|
| Q |
601 |
agagttatctgcaatttctgtaatacaaattcgatatgcactacgaacagaataactaccatttttctcagtcttccaaataattttatcttcatgaaca |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11352565 |
agagttatctgcaatttctgtaatacaaattcaatatgcactatgaacaaaataactaccatttttctcaaccttccaaataattttatcttcatgaaca |
11352664 |
T |
|
| Q |
701 |
agaggatggagaggagtattcaaaataagctgggaagtattatgatcaaacaaattagaaattaaagtagcattccaaacctttgtcgatgttttgatga |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| || ||||| |
|
|
| T |
11352665 |
agaggatggagaggagtattcaaaataagctgggaagtattatgatcaaacaaattagaaattaaagtagcacttcaaacctttgtcgatggttcgatga |
11352764 |
T |
|
| Q |
801 |
tgtc |
804 |
Q |
| |
|
|||| |
|
|
| T |
11352765 |
tgtc |
11352768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 317 - 801
Target Start/End: Complemental strand, 20639066 - 20638582
Alignment:
| Q |
317 |
aaagcatccatgttataatttcgacggagagttctatcaataatatcccataaattaacctcccgccacgcttgcatcgcacctggacattctaacaaga |
416 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
20639066 |
aaagcatccatgttataatttcgacgtagagttctatcaataatatcccataaattaacctcccgccacgcttgcatcgcacctggacattctaataaga |
20638967 |
T |
|
| Q |
417 |
catgaatactatcttcataattagttccacacaagacacaattattaggacaatgaataccacgactacttaggcatgcacgtgtaggcaaacagccccg |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| |
|
|
| T |
20638966 |
catgaatactatcttcataattagttccacacaagacacaatcattaggacaatgaataccacgactacttaggcgtgcacgagtagggaaacagccccg |
20638867 |
T |
|
| Q |
517 |
acacacacgccaaacaaagtttcgaatcttgggaggaaccttaagcttccatatcgaactccacttccccggaacatgcaaatgagagttatctgcaatt |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20638866 |
acacacacgccaaacaaagtttcgaatcttgggaggaacctgaagcttccatatcgaactccacctccccggaacatgcaaatgagagttatctgcaatt |
20638767 |
T |
|
| Q |
617 |
tctgtaatacaaattcgatatgcactacgaacagaataactaccatttttctcagtcttccaaataattttatcttcatgaacaagaggatggagaggag |
716 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
20638766 |
tctgtaacacaaattcgatatgcactacaaacagaataactaccatttttctcagctttccaaataattttatcttcatgaacaagatgatggagaggag |
20638667 |
T |
|
| Q |
717 |
tattcaaaataagctgggaagtattatgatcaaacaaattagaaattaaagtagcattccaaacctttgtcgatgttttgatgat |
801 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||| |
|
|
| T |
20638666 |
tattcaaaataagttgggaagtattatgatcaaacaaattagaaattaaagtagcatgccaaacctttgtcgatggttcgatgat |
20638582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 20639333 - 20639068
Alignment:
| Q |
1 |
taccatattcagagagtcggaaaaggaggcatcaatattacatttgtacctaccatatatcggcttcgtccacttgatgacaagagcatgaataacacta |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||| || |||| ||||||||| |
|
|
| T |
20639333 |
taccatattcagagagtcagaaaaggaggcatcaatattacatttgtacctaccatatgccggcctcgtccactcgatgacaggaccatggataacacta |
20639234 |
T |
|
| Q |
101 |
ttcggctgagcaaggatgtccgtagctttgtgtgatatgacttcttgggcggttctccaatcatctaagaggtgtcgggcccgttcaacaacctgtagac |
200 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
20639233 |
ttcggctgagcagggatgtctgtagctttgtgcgatctgacttcttgggcggttctccaatcatctaagaggtgtcgggcccgttcaacaacttgtagac |
20639134 |
T |
|
| Q |
201 |
atgtttcattttgttgttgccacaatttgaaattcctgcgcttccacaagctccacatgatcgtca |
266 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
20639133 |
atgtttcattttgttgttgccacaattttaaattcctacgcttccacaagctccacatgatcgtca |
20639068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 6783127 - 6783035
Alignment:
| Q |
37 |
attacatttgtacctaccatatatcggcttcgtccacttgatgacaagagcatgaataacactattcggctgagcaaggatgtccgtagcttt |
129 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6783127 |
attacatttgtatctaccatataccggcttcgtccactcaatgacaggaccatgaataacactattcggctgagcaaggatgtccgtaacttt |
6783035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 32989256 - 32989354
Alignment:
| Q |
1 |
taccatattcagagagtcggaaaaggaggcatcaatattacatttgtacctaccatatatcggcttcgtccacttgatgacaagagcatgaataacact |
99 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||| ||| |||||| ||||||| || | ||||||||||| |
|
|
| T |
32989256 |
taccatattcagagagtcagaaaaggaggcattaatattacatttgtacctaccatatgccggtttcttccactcgatgacaggaccgtgaataacact |
32989354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 202 - 327
Target Start/End: Original strand, 44840426 - 44840547
Alignment:
| Q |
202 |
tgtttcattttgttgttgccacaatttgaaattcctgcgcttccacaagctccacatgatcgtcacaaacaattctttttgcgcagaaggcagctggtca |
301 |
Q |
| |
|
|||||||||||| |||||||| || |||| |||| |||||||||| || |||||||| || |||||||| ||||||||||| ||| ||||| ||| |
|
|
| T |
44840426 |
tgtttcattttgatgttgccataacttgagattcatgcgcttccataaactccacataattgtcacaaataattctttttg----taagatagctgatca |
44840521 |
T |
|
| Q |
302 |
agaagagaaaatatcaaagcatccat |
327 |
Q |
| |
|
||||||| ||| |||||||||||||| |
|
|
| T |
44840522 |
agaagagtaaaaatcaaagcatccat |
44840547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 206 - 534
Target Start/End: Original strand, 39649305 - 39649631
Alignment:
| Q |
206 |
tcattttgttgttgccacaatttgaaattcctgcgcttccacaagctccacatgatcgtcacaaacaattctttttgcgcagaaggcagctggtcaagaa |
305 |
Q |
| |
|
||||||||| |||||||||||| ||||| ||||||||||| || |||||| | || || ||||||||||| |||| | || | | || | |||| |
|
|
| T |
39649305 |
tcattttgtatttgccacaattttaaatttctgcgcttccataaactccacgtaattgtaacaaacaattcactttgggacgatgataactattggagaa |
39649404 |
T |
|
| Q |
306 |
gagaaaatatcaaagcatccatgttataatttcgacggagagttctatcaataatatcccataaattaacctcccgccacgcttgcatcgcacctggaca |
405 |
Q |
| |
|
||||||| | || ||||||||| ||||||||| | ||||||||||||||||| |||| ||||| | || || |||| ||||| || | || | ||| |
|
|
| T |
39649405 |
gagaaaaaaccagagcatccatattataattttggcggagagttctatcaattgtatctcataagtgtacatcaagccaagcttgaatag--ccggaaca |
39649502 |
T |
|
| Q |
406 |
ttctaacaagacatgaatactatcttcataattagttccacacaagacacaattattaggacaatgaataccacgactacttaggcatgcacgtgtaggc |
505 |
Q |
| |
|
||| ||||| |||| ||||||||||||||||||| | ||||| | ||||||| | | ||| |||||| || ||| |||| || | ||||| ||| | |
|
|
| T |
39649503 |
ttccaacaacacattaatactatcttcataattactaccacaaagaacacaatcaatcggataatgaactcctcgaatactaagacgtgcacatgtggaa |
39649602 |
T |
|
| Q |
506 |
aaacagccccgacacacacgccaaacaaa |
534 |
Q |
| |
|
||||| ||||||||||| ||||| ||||| |
|
|
| T |
39649603 |
aaacaaccccgacacacgcgccacacaaa |
39649631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 6784021 - 6783976
Alignment:
| Q |
1 |
taccatattcagagagtcggaaaaggaggcatcaatattacatttg |
46 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
6784021 |
taccatattcagagagacagaaaaggaggcatcaatattacatttg |
6783976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 589 - 632
Target Start/End: Complemental strand, 27876856 - 27876813
Alignment:
| Q |
589 |
aacatgcaaatgagagttatctgcaatttctgtaatacaaattc |
632 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
27876856 |
aacatgcatatgagagttatctgcaatttctgtaacacaaattc |
27876813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 638 - 680
Target Start/End: Complemental strand, 12223757 - 12223715
Alignment:
| Q |
638 |
gcactacgaacagaataactaccatttttctcagtcttccaaa |
680 |
Q |
| |
|
||||||| ||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
12223757 |
gcactacaaacagaatacctaccatttttgtcagtcttccaaa |
12223715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 608 - 681
Target Start/End: Complemental strand, 33314307 - 33314234
Alignment:
| Q |
608 |
tctgcaatttctgtaatacaaattcgatatgcactacgaacagaataactaccatttttctcagtcttccaaat |
681 |
Q |
| |
|
|||||||||| || | |||||| ||||| ||||||||||| |||||| ||||||| ||||| || |||||||| |
|
|
| T |
33314307 |
tctgcaattttagtcacacaaatacgataagcactacgaaccgaataattaccattcttctccgtattccaaat |
33314234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 664; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 1 - 804
Target Start/End: Original strand, 43989625 - 43990428
Alignment:
| Q |
1 |
taccatattcagagagtcggaaaaggaggcatcaatattacatttgtacctaccatatatcggcttcgtccacttgatgacaagagcatgaataacacta |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||| || |||||||||||||| |
|
|
| T |
43989625 |
taccatattcagagagtcagaaaaggaggcatcaatattacatttgtacctaccatataccgacttcgtccactcgatgacaggaccatgaataacacta |
43989724 |
T |
|
| Q |
101 |
ttcggctgagcaaggatgtccgtagctttgtgtgatatgacttcttgggcggttctccaatcatctaagaggtgtcgggcccgttcaacaacctgtagac |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43989725 |
ttcagctgagcaaggatgtccgtagctttgtgtgatatgacttcttgggcggttctccaatcatctaagaggtgtcgggcccattcaacaacctgtagac |
43989824 |
T |
|
| Q |
201 |
atgtttcattttgttgttgccacaatttgaaattcctgcgcttccacaagctccacatgatcgtcacaaacaattctttttgcgcagaaggcagctggtc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
43989825 |
atgtttcattttgttgttgccacaattttaaattcctacgcttccacaagctccacatgatcgtcataaacaattctttttgcgcaaaaggcagctggtc |
43989924 |
T |
|
| Q |
301 |
aagaagagaaaatatcaaagcatccatgttataatttcgacggagagttctatcaataatatcccataaattaacctcccgccacgcttgcatcgcacct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43989925 |
aagaagagaaaatatcaaagcatccatgttataatttcgacggagagttctatcaataatatcccataaattaacctcccgccacacttgcatcgcacct |
43990024 |
T |
|
| Q |
401 |
ggacattctaacaagacatgaatactatcttcataattagttccacacaagacacaattattaggacaatgaataccacgactacttaggcatgcacgtg |
500 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43990025 |
ggatattctaacaagacatgaatactatcttcataattagttccacacaagacaaaatcattaggacaatgaataccacgactacttaggcgtgcacgtg |
43990124 |
T |
|
| Q |
501 |
taggcaaacagccccgacacacacgccaaacaaagtttcgaatcttgggaggaaccttaagcttccatatcgaactccacttccccggaacatgcaaatg |
600 |
Q |
| |
|
|||| ||||| |||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43990125 |
tagggaaacaaccccgacacacaggccaaacaaaatttcgaatcttgggaggaaacttaagcttccatatcgaactccacttccccggaacgtgcaaatg |
43990224 |
T |
|
| Q |
601 |
agagttatctgcaatttctgtaatacaaattcgatatgcactacgaacagaataactaccatttttctcagtcttccaaataattttatcttcatgaaca |
700 |
Q |
| |
|
||||||||||||||||| ||||| | ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43990225 |
agagttatctgcaatttttgtaacataaattcgatatgcactacggacagaataactaccatttttctcagccttccaaataattttatcttcatgaaca |
43990324 |
T |
|
| Q |
701 |
agaggatggagaggagtattcaaaataagctgggaagtattatgatcaaacaaattagaaattaaagtagcattccaaacctttgtcgatgttttgatga |
800 |
Q |
| |
|
| |||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||| |
|
|
| T |
43990325 |
aaaggatggaaatgagtattcaaaataagttgggaagtattatgatcaaacaaattagaaattaaagttgcattccaaacctttgtcgatggttcgatga |
43990424 |
T |
|
| Q |
801 |
tgtc |
804 |
Q |
| |
|
|||| |
|
|
| T |
43990425 |
tgtc |
43990428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 204 - 791
Target Start/End: Original strand, 19316457 - 19317045
Alignment:
| Q |
204 |
tttcattttgttgttgccacaatttgaaattcctgcgcttccacaagctccacatgatcgtcacaaacaattctttttgcgcagaaggcagctggtcaag |
303 |
Q |
| |
|
||||||||||||||||||| ||||| || ||| | | |||||||| |||||||| ||||| |||||||| | |||||| || | || || ||| |||| |
|
|
| T |
19316457 |
tttcattttgttgttgccataattttaagttcatttgtttccacaaactccacataatcgttacaaacaaatatttttgagctggagatagatggccaag |
19316556 |
T |
|
| Q |
304 |
aagagaaaatatcaaagcatccatgttataatttcgacggagagttctatcaataatatcccataaattaacctcccgccacgcttgcatcgcacctgga |
403 |
Q |
| |
|
|||||||||||| | || |||||| ||||||||||||||||| |||||||||| |||||||||| | |||||| | ||| | || ||| || |||| | |
|
|
| T |
19316557 |
aagagaaaatattagagaatccatattataatttcgacggaggattctatcaatcgtatcccataattgaacctcacaccatggtttcattgcgcctgaa |
19316656 |
T |
|
| Q |
404 |
cattctaacaagacatgaatactatcttcataattagttccacacaagacacaattat-taggacaatgaataccacgactacttaggcatgcacgtgta |
502 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||||||| | |||||||| | | || | | ||||| |||| ||||| ||||||||| ||||||||| |
|
|
| T |
19316657 |
cattccaacaacacatgaattctatcttcataattactaccacacaaaaaaaaaatctataggataatgtgctccacggatacttaggcgtgcacgtgtt |
19316756 |
T |
|
| Q |
503 |
ggcaaacagccccgacacacacgccaaacaaagtttcgaatcttgggaggaaccttaagcttccatatcgaactccacttccccggaacatgcaaatgag |
602 |
Q |
| |
|
|| || ||| | ||||||||| || | ||||| |||| |||||| ||||| |||||||||||||||||| | ||||| | ||||||| |||||||| | |
|
|
| T |
19316757 |
gggaagcagacacgacacacatgcaacacaaaatttctaatctttggaggtaccttaagcttccatatcagattccacctacccggaatatgcaaatagg |
19316856 |
T |
|
| Q |
603 |
agttatctgcaatttctgtaatacaaattcgatatgcactacgaacagaataactaccatttttctcagtcttccaaataattttatcttcatgaacaag |
702 |
Q |
| |
|
| ||||||||||||||||| | |||||| | || |||||||| ||||||||| ||||||||||||| ||||||||| | |||||||||||||||||| |
|
|
| T |
19316857 |
aattatctgcaatttctgttacacaaatacaatgtgcactacagacagaataattaccatttttctcgaccttccaaattaatttatcttcatgaacaag |
19316956 |
T |
|
| Q |
703 |
aggatggagaggagtattcaaaataagctgggaagtattatgatcaaacaaattagaaattaaagtagcattccaaacctttgtcgatg |
791 |
Q |
| |
|
||| || ||| |||||||||||||||| |||| ||| |||||||| |||||||||||||||| ||||| ||||||||||||||| |||| |
|
|
| T |
19316957 |
aggttgaagatgagtattcaaaataagttgggtagtgttatgatcgaacaaattagaaattacagtagtattccaaacctttgttgatg |
19317045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 541 - 655
Target Start/End: Complemental strand, 12608220 - 12608106
Alignment:
| Q |
541 |
aatcttgggaggaaccttaagcttccatatcgaactccacttccccggaacatgcaaatgagagttatctgcaatttctgtaatacaaattcgatatgca |
640 |
Q |
| |
|
|||||||||||||||||| | |||||||||| || ||||| ||| | | |||||||||||| |||||||||||||| | | |||||||| ||||||| |
|
|
| T |
12608220 |
aatcttgggaggaacctttaacttccatatcaaattccaccaccctagtaaatgcaaatgagaattatctgcaatttcattcacacaaattctatatgca |
12608121 |
T |
|
| Q |
641 |
ctacgaacagaataa |
655 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
12608120 |
ctacgaacataataa |
12608106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 567
Target Start/End: Original strand, 34215575 - 34215642
Alignment:
| Q |
500 |
gtaggcaaacagccccgacacacacgccaaacaaagtttcgaatcttgggaggaaccttaagcttcca |
567 |
Q |
| |
|
||||| ||||| |||||||||| | ||||| |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
34215575 |
gtaggtaaacaaccccgacacatcctccaaattaagtttcgaatctttggaggaactttaagcttcca |
34215642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 583; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 1 - 791
Target Start/End: Complemental strand, 942436 - 941644
Alignment:
| Q |
1 |
taccatattcagagagtcggaaaaggaggcatcaatattacatttgtacctaccatatatcggcttcgtccacttgatgacaagagcatgaataacacta |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||| || |||| || ||| || |
|
|
| T |
942436 |
taccatattcagagagtcagaaaaggaggcatcaatattacatttgtacctaccatatgctggcctcgtccactcgatgacaggaccatggatgacatta |
942337 |
T |
|
| Q |
101 |
ttcggctgagcaaggatgtccgtagctttgtgtgatatgacttcttgggcggttctccaatcatctaagaggtgtcgggcccgttcaacaacctgtagac |
200 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||| |
|
|
| T |
942336 |
ttcggctgagcagggatgtctgtagctttgtgggatctgatttcttgggcggttctccaatcatctaagaggtgtcaggcccgttcaacaatccgtagac |
942237 |
T |
|
| Q |
201 |
atgtttcattttgttgttgcca----caatttgaaattcctgcgcttccacaagctccacatgatcgtcacaaacaattctttttgcgcagaaggcagct |
296 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
942236 |
atgtttcattttgttgttgccatgcacaattttaaattcctacgcttccacaagctccgcatgatcgtcacaaacaattctttttgtgcagaaggcagct |
942137 |
T |
|
| Q |
297 |
ggtcaagaagagaaaatatcaaagcatccatgttataatttcgacggagagttctatcaataatatcccataaattaacctcccgccacgcttgcatcgc |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
942136 |
ggtcaagaagagaaaatatcaaagcatccatgttataatttcgatgtagagttctatcaataatatcccataaattaacctcccgccacgcttacaccgc |
942037 |
T |
|
| Q |
397 |
acctggacattctaacaagacatgaatactatcttcataattagttccacacaagacacaattattaggacaatgaataccacgactacttaggcatgca |
496 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
942036 |
acctggacattctaataagacatgaatattatcttcataattagttccacacaagtcacaatcattaggacaatgaataccacgactacctaggcgtgca |
941937 |
T |
|
| Q |
497 |
cgtgtaggcaaacagccccgacacacacgccaaacaaagtttcgaatcttgggaggaaccttaagcttccatatcgaactccacttccccggaacatgca |
596 |
Q |
| |
|
|| ||||| |||| ||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
941936 |
cgagtaggaaaactaccctgacacac--gccaaacgaagtttcgaatcttgggaggaaccttaagcttccatatctaactccacttccccagaacatgca |
941839 |
T |
|
| Q |
597 |
aatgagagttatctgcaatttctgtaatacaaattcgatatgcactacgaacagaataactaccatttttctcagtcttccaaataattttatcttcatg |
696 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
941838 |
aatgagagttatctgcaatttctgtaacacaaattcgatatgcactacaaacagaataactaccatttttctcagccttccaaataattctatcttcatg |
941739 |
T |
|
| Q |
697 |
aacaagaggatggagaggagtattcaaaataagctgggaagtattatgatcaaacaaattagaaattaaagtagcattccaaacctttgtcgatg |
791 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
941738 |
aacaagaggatggagaggagtattctaaataagctgggaagtattatgatcaaacaaattagaaattaaagtagcattccaaacctttgtcgatg |
941644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 506 - 671
Target Start/End: Complemental strand, 4511711 - 4511546
Alignment:
| Q |
506 |
aaacagccccgacacacacgccaaacaaagtttcgaatcttgggaggaaccttaagcttccatatcgaactccacttccccggaacatgcaaatgagagt |
605 |
Q |
| |
|
||||| ||| ||||| |||||| ||||||||| |||||||||||||| ||||||||||| ||| || |||| |||||| ||||| ||||| | | |
|
|
| T |
4511711 |
aaacatccctgacacttacgccacacaaagtttttgatcttgggaggaactttaagcttccaaatcaaattccatctccccgacacatgtaaatggaaat |
4511612 |
T |
|
| Q |
606 |
tatctgcaatttctgtaatacaaattcgatatgcactacgaacagaataactaccatttttctcag |
671 |
Q |
| |
|
|||||||||| || || | |||||| ||||||||| |||| ||||||||| ||||||||||||||| |
|
|
| T |
4511611 |
tatctgcaatgtcagttacacaaatacgatatgcattacggacagaataattaccatttttctcag |
4511546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 567
Target Start/End: Complemental strand, 16322636 - 16322569
Alignment:
| Q |
500 |
gtaggcaaacagccccgacacacacgccaaacaaagtttcgaatcttgggaggaaccttaagcttcca |
567 |
Q |
| |
|
||||| ||||| |||||||||| | ||||| |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
16322636 |
gtaggtaaacaaccccgacacatcctccaaattaagtttcgaatctttggaggaactttaagcttcca |
16322569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 567
Target Start/End: Complemental strand, 16334784 - 16334717
Alignment:
| Q |
500 |
gtaggcaaacagccccgacacacacgccaaacaaagtttcgaatcttgggaggaaccttaagcttcca |
567 |
Q |
| |
|
||||| ||||| |||||||||| | ||||| |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
16334784 |
gtaggtaaacaaccccgacacatcctccaaattaagtttcgaatctttggaggaactttaagcttcca |
16334717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 589 - 631
Target Start/End: Complemental strand, 32895175 - 32895133
Alignment:
| Q |
589 |
aacatgcaaatgagagttatctgcaatttctgtaatacaaatt |
631 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
32895175 |
aacatgcatatgagagttatctgcaatttctgtagcacaaatt |
32895133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 401 - 438
Target Start/End: Complemental strand, 19046432 - 19046395
Alignment:
| Q |
401 |
ggacattctaacaagacatgaatactatcttcataatt |
438 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
19046432 |
ggacattctaacaaaacatggatactatcttcataatt |
19046395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 477; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 1 - 784
Target Start/End: Original strand, 24809123 - 24809914
Alignment:
| Q |
1 |
taccatattcagagagtcggaaaaggaggcatcaatattacatttgtacctaccatatatcggcttcgtccacttgatgacaagagcatgaataacacta |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| || ||||||||||| | |
|
|
| T |
24809123 |
taccatattcaaagagtcggaaaaggaggcatcaatattacatttgtacctaccatatgtcggcttcgtccactcaatgacatgaccatgaataacattg |
24809222 |
T |
|
| Q |
101 |
ttcggctgagcaaggatgtccgtagctttgtgtgatatgacttcttgggcggttctccaatcatctaagaggtgtcgggcccgttcaacaacctgtagac |
200 |
Q |
| |
|
|| |||||||| | ||| |||||||| || ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | || |
|
|
| T |
24809223 |
tttggctgagcgggattgttagtagctttatgcgatctgacttcttgggcggttctccaatcatctaagaggtgtcgagcccgttcaacaacatgcatac |
24809322 |
T |
|
| Q |
201 |
atgtttcattttgttgttgccacaatttgaaattcctgcgcttccacaagctccacatgatcgtcacaaacaa---------ttctttttgcgcagaagg |
291 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| || || |||||| | |||||| |
|
|
| T |
24809323 |
atgtttcattttgttgttgccacaattttaagttcctacgcttccacaagctccacatgatcgtcacaaataacttttttttttttttttgtgtagaagg |
24809422 |
T |
|
| Q |
292 |
cagctggtcaagaagagaaaatatcaaagcatccatgttataatttcgacggagagttctatcaataatatcccataaattaacctcccgccacgcttgc |
391 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
24809423 |
cagctggtcaagaagggaaaatatcaaagcatccatgttataattttgacggagagttctatcaataatttcccataa-ttaacctcccgccatgcttgt |
24809521 |
T |
|
| Q |
392 |
atcgcacctggacattctaacaagacatgaatactatcttcataattagttccacacaagacacaattattaggacaatgaataccacgactacttaggc |
491 |
Q |
| |
|
| ||||||| |||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
24809522 |
accgcacctagacattctaataagacatgaatgatatcttcataattagttccgcacaaaacacaatgattaggacaatgaataccacgactaagtaggt |
24809621 |
T |
|
| Q |
492 |
atgcacgtgtaggcaaacagccccgacacacacgccaaacaaagtttcgaatcttgggaggaaccttaagcttccatatcgaactccacttccccggaac |
591 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||| ||| ||||||||||||| ||||| |||||||| ||||||||||| || ||||||| |
|
|
| T |
24809622 |
gtgcacgtgtaggaaaacagccccaacacacacgccaaacaaaattttgaatcttgggaggtaccttgagcttccaaatcgaactccaattgcccggaat |
24809721 |
T |
|
| Q |
592 |
atgcaaatgagagttatctgcaatttctgtaatacaaattcgatatgcactacgaacagaataactaccatttttctcagtcttccaaataattttatct |
691 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | |||||| ||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24809722 |
atgcaaatgagagttatcagcaatttctgtgacacaaatacgatatgcactacaaacagaataattaccatttttctcagccttccaaataattttatct |
24809821 |
T |
|
| Q |
692 |
tcatgaacaagaggatggagaggagtattcaaaataagctgggaagtattatgatcaaacaaattagaaattaaagtagcattccaaaccttt |
784 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | || ||||||||| ||||| |||||||||||| |
|
|
| T |
24809822 |
tcatgaacaagaggatggagaggagtattcaaaataagctgggtagtattatgatcaaaaagataagaaattaaggtagcgttccaaaccttt |
24809914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 803
Target Start/End: Complemental strand, 23820266 - 23819472
Alignment:
| Q |
1 |
taccatattcagagagtcggaaaaggaggcatcaatattacatttgtacctaccatatatcggcttcgtccacttgatgacaagagcatgaataacacta |
100 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||| ||||||| || ||||||||||| | |
|
|
| T |
23820266 |
taccatatttagagagttagaaaaggaggcatcaatattatattagtacctaccatatgtcggcttcgtccactcgatgacaggaccatgaataacaatg |
23820167 |
T |
|
| Q |
101 |
ttcggctgagcaaggatgtccgtagctttgtgtgatatgacttcttgggcggttctccaatcatctaagaggtgtcgggcccgttcaacaacctgtagac |
200 |
Q |
| |
|
||||| || ||| ||||| | || |||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || | || |
|
|
| T |
23820166 |
ttcggttgtgcagggatgccagtcgctttgtgcgatctgacttcttgggcggttctccaatcatctaagaggtggcgggctcgttcaacaacatgcatac |
23820067 |
T |
|
| Q |
201 |
atgtttcattttgttgttgccacaatttgaaattcctgcgcttccacaagctccacatgatcgtcacaaacaattctttttgcgcagaaggcagctggtc |
300 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| | ||||| ||||| |
|
|
| T |
23820066 |
gcgtttcattttgttgttgccataattttaaattcctacgcttccacaagctccacatgatcatcacaaacaattctttttgcgcaaacggcagttggtc |
23819967 |
T |
|
| Q |
301 |
aagaagagaaaatatcaaagcatccatgttataatttcgacggagagttctatcaataatatcccataaattaacctcccgccacgcttgcatcgcacct |
400 |
Q |
| |
|
|||||||||||| ||||||| || ||||||||||||| |||| | ||||||||||||||||||| |||| ||||||||||| ||| |||||||||||||| |
|
|
| T |
23819966 |
aagaagagaaaagatcaaagaattcatgttataattttgacgtaaagttctatcaataatatccgataagttaacctcccgtcacacttgcatcgcacct |
23819867 |
T |
|
| Q |
401 |
ggacattctaacaagacatgaatactatcttcataattagttccacacaagacacaattattaggacaatgaataccacgactacttaggcatgcacgtg |
500 |
Q |
| |
|
| ||||||||| ||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
23819866 |
gaacattctaataagacatgaatgatatcttcataattagttccac-------acaatcattaggacaatgaataccacaactacttaggcgtgcacgtg |
23819774 |
T |
|
| Q |
501 |
taggcaaacagccccgacacacacgccaaacaaagtttcgaatcttgggaggaaccttaagcttccatatcgaactccacttccccggaacatgcaaatg |
600 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||| |||| |||||||||||| |
|
|
| T |
23819773 |
tagcgaaacaaccccgacacacacgccaaacaaagttttgaatcttgggagggaccttaagcttccaaatcgaactccacttacccgaaacatgcaaatg |
23819674 |
T |
|
| Q |
601 |
agagttatctgcaatttctgtaatacaaattcgatatgcactacgaacagaataactaccatttttctcagtcttccaaataattttatcttcatgaaca |
700 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| ||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23819673 |
agagttatctgcaatttttgtaacacaaatttgatatgcactatgaacagaataactacca-ttttctcagccttccaaataattttatcttcatgaaca |
23819575 |
T |
|
| Q |
701 |
agaggatggagaggagtattcaaaataagctgggaagtattatgatcaaacaaattagaaattaaagtagcattccaaacctttgtcgatgttttgatga |
800 |
Q |
| |
|
|||||| ||||| ||||||| |||||||||| |||||||||||||||||||| |||||||||||| | |||||||||||||||| || ||| || ||||| |
|
|
| T |
23819574 |
agaggaaggagatgagtatttaaaataagctaggaagtattatgatcaaacagattagaaattaaggcagcattccaaacctttttcaatggttcgatga |
23819475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 202 - 750
Target Start/End: Complemental strand, 21117937 - 21117389
Alignment:
| Q |
202 |
tgtttcattttgttgttgccacaatttgaaattcctgcgcttccacaagctccacatgatcgtcacaaacaattctttttgcgcagaaggcagctggtca |
301 |
Q |
| |
|
|||||||||||| |||||||| || |||| ||||||||||||||| || |||||||| || |||||||| ||||||||||| | ||| |||||| ||| |
|
|
| T |
21117937 |
tgtttcattttgctgttgccataacttgagattcctgcgcttccataaactccacataattgtcacaaataattctttttgtaccaaagacagctgatca |
21117838 |
T |
|
| Q |
302 |
agaagagaaaatatcaaagcatccatgttataatttcgacggagagttctatcaataatatcccataaattaacctcccgccacgcttgcatcgcacctg |
401 |
Q |
| |
|
||||||| ||| |||||||||||||| ||||||||| || || ||||| | || ||||||||||| | ||| || || || || || || ||| |
|
|
| T |
21117837 |
agaagagtaaaaatcaaagcatccatattataattttttcgaagtgttctgtttattatatcccataactaaacttcacgtcatgcctgttgtgcgccta |
21117738 |
T |
|
| Q |
402 |
gacattctaacaagacatgaatactatcttcataattagttccacacaagacacaattattaggacaatgaataccacgactacttaggcatgcacgtgt |
501 |
Q |
| |
|
| |||||||| || ||||||||||||||||| ||||| | |||| | ||||||| | ||||| || | || || ||||| || | || || || |
|
|
| T |
21117737 |
ggcattctaataacacatgaatactatcttcgaaattattaacacaaagaacacaatctgtcggacattgcacccctcggctactgagtcgtgtgcgggt |
21117638 |
T |
|
| Q |
502 |
aggcaaacagccccgacacacacgccaaacaaagtttcgaatcttgggaggaaccttaagcttccatatcgaactccacttccccggaacatgcaaatga |
601 |
Q |
| |
|
|| |||||||||| ||||||| |||| ||||||||| ||||| |||||||| || |||||||| ||| || |||| |||| |||||||| ||||| |
|
|
| T |
21117637 |
tgggaaacagcccctacacacatgccacacaaagttttttatcttaggaggaacttttagcttccaaatcaaattccatctcccgggaacatgtaaatgg |
21117538 |
T |
|
| Q |
602 |
gagttatctgcaatttctgtaatacaaattcgatatgcactacgaacagaataactaccatttttctcagtcttccaaataattttatcttcatgaacaa |
701 |
Q |
| |
|
|| ||||||||||| || || | ||| || |||||||||||||||||| ||||| | ||| ||||| | | |||||| | | ||| ||||||| || || |
|
|
| T |
21117537 |
gaattatctgcaatgtcagttacacatatacgatatgcactacgaacataataatttccacttttcgctgccttccacactaatttgtcttcattaataa |
21117438 |
T |
|
| Q |
702 |
gaggatggagaggagtattcaaaataagctgggaagtattatgatcaaa |
750 |
Q |
| |
|
| || || |||||||| |||||||||| |||| ||| || |||||||| |
|
|
| T |
21117437 |
gtgggtgaagaggagtgttcaaaataatttgggtagtgttttgatcaaa |
21117389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 36684648 - 36684359
Alignment:
| Q |
1 |
taccatattcagagagtcggaaaaggaggcatcaatattacatttgtacctaccatatatcggcttcgtccacttgatgacaagagcatgaataacacta |
100 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||| |||||||| ||||||||| ||||| |||||||||||||||| || |||||||||||||| |
|
|
| T |
36684648 |
taccatattcagagggtcagaaaaggaggcatcaatattatatttgtacttaccatataccggctgcgtccacttgatgacaggaccatgaataacacta |
36684549 |
T |
|
| Q |
101 |
ttcggctgagcaaggatgtccgtagctttgtgtgatatgacttcttgggcggttctccaatcatctaagaggtgtcgggcccgttcaacaacctgtagac |
200 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36684548 |
ttcggcttagcaaggatgtctgtagctttgtgtgatatgacttcttgggcggttctccaaccatctaagaggtgtcgggcccgttcaacaacctgtagac |
36684449 |
T |
|
| Q |
201 |
atgtttcattttgttgttgccacaatttgaaattcctgcgcttccacaagctccacatgatcgtcacaaacaattctttttgcgcagaag |
290 |
Q |
| |
|
|||||||||||| |||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36684448 |
atgtttcattttattgttgtcacaattttaaattcctgcgtttccacaagctccacatgatcgtcacaaacaattctttttacgcagaag |
36684359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 8705455 - 8705203
Alignment:
| Q |
1 |
taccatattcagagagtcggaaaaggaggcatcaatattacatttgtacctaccatatatcggcttcgtccacttgatgacaagagcatgaataacacta |
100 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| | |||||| ||||||| |||||| || | |||||||||||| |
|
|
| T |
8705455 |
taccatattcagagagtcagaaaaagaggcatcaatattacatttgtacctaccatacaccggctttgtccactcaatgacatgaccgtgaataacacta |
8705356 |
T |
|
| Q |
101 |
ttcggctgagcaaggatgtccgtagctttgtgtgatatgacttcttgggcggttctccaatcatctaagaggtgtcgggcccgttcaacaacctgtagac |
200 |
Q |
| |
|
||||| |||||| | |||| ||||||| |||||| ||||||||||||||||||||||||| ||||||||||| | |||||||| |||||||| | || |
|
|
| T |
8705355 |
ttcggttgagcatgattgtcattagctttatgtgatctgacttcttgggcggttctccaatcttctaagaggtgcctagcccgttccacaacctgcacac |
8705256 |
T |
|
| Q |
201 |
atgtttcattttgttgttgccacaatttgaaattcctgcgcttccacaagctc |
253 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| ||||||||||||||| |
|
|
| T |
8705255 |
atgtttcattttgttgttgtcacaattttaaattcctacgcttccacaagctc |
8705203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 9057342 - 9057090
Alignment:
| Q |
1 |
taccatattcagagagtcggaaaaggaggcatcaatattacatttgtacctaccatatatcggcttcgtccacttgatgacaagagcatgaataacacta |
100 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| | |||||| ||||||| |||||| || | |||||||||||| |
|
|
| T |
9057342 |
taccatattcagagagtcagaaaaagaggcatcaatattacatttgtacctaccatacaccggctttgtccactcaatgacatgaccgtgaataacacta |
9057243 |
T |
|
| Q |
101 |
ttcggctgagcaaggatgtccgtagctttgtgtgatatgacttcttgggcggttctccaatcatctaagaggtgtcgggcccgttcaacaacctgtagac |
200 |
Q |
| |
|
||||| |||||| | |||| ||||||| |||||| ||||||||||||||||||||||||| ||||||||||| | |||||||| |||||||| | || |
|
|
| T |
9057242 |
ttcggttgagcatgattgtcattagctttatgtgatctgacttcttgggcggttctccaatcttctaagaggtgcctagcccgttccacaacctgcacac |
9057143 |
T |
|
| Q |
201 |
atgtttcattttgttgttgccacaatttgaaattcctgcgcttccacaagctc |
253 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| ||||||||||||||| |
|
|
| T |
9057142 |
atgtttcattttgttgttgtcacaattttaaattcctacgcttccacaagctc |
9057090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 187 - 615
Target Start/End: Original strand, 26391280 - 26391705
Alignment:
| Q |
187 |
aacaacctgtagacatgtttcattttgttgttgccacaatttgaaattcctgcgcttccacaagctccacatgatcgtcacaaacaattctttttgcgca |
286 |
Q |
| |
|
||||||||| |||| | |||||||||| | ||||||||||| || ||||| ||||||||| ||||| ||||| | ||||| |||||||||||| || |
|
|
| T |
26391280 |
aacaacctgcagacttatttcattttgctactgccacaattttaagttcctacgcttccacggactccaaatgatggccacaa-caattctttttgtgcc |
26391378 |
T |
|
| Q |
287 |
gaaggcagctggtcaagaagagaaaatatcaaagcatccatgttataatttcgacggagagttctatcaataatatcccataaattaacctcccgccacg |
386 |
Q |
| |
|
||| ||||||||||| ||| |||||||| | |||||| || ||||||||| ||| |||||||||||||| | |||||||| | ||||| ||||| | |
|
|
| T |
26391379 |
gaacacagctggtcaaaaagggaaaatattagagcatcaatattataatttttacgaagagttctatcaatcgtgtcccataattggacctcacgccatg |
26391478 |
T |
|
| Q |
387 |
cttgcatcgcacctggacattctaacaagacatgaatactatcttcataattagttccacacaagacacaattattaggacaatgaataccacgactact |
486 |
Q |
| |
|
||||||| ||||||||||| | ||||| |||||||| | | |||||||||| |||||||||||| | ||| |||||||||| | ||| ||||||| |
|
|
| T |
26391479 |
cttgcattgcacctggaca--ccaacaacacatgaatgttgtattcataattacttccacacaagaaataatctataggacaatgtagtccatgactact |
26391576 |
T |
|
| Q |
487 |
taggcatgcacgtgtaggcaaacagccccgacacacacgccaaacaaagtttcgaatcttgggaggaaccttaagcttccatatcgaactccacttcccc |
586 |
Q |
| |
|
||||| |||||||||| | ||||| ||||||||||||||||| ||||| ||| |||||||| |||| ||||| || ||| | ||| || ||||||| ||| |
|
|
| T |
26391577 |
taggcgtgcacgtgtaaggaaacaaccccgacacacacgccatacaaaattttgaatcttgagaggtaccttgagtttctaaatcaaattccacttaccc |
26391676 |
T |
|
| Q |
587 |
ggaacatgcaaatgagagttatctgcaat |
615 |
Q |
| |
|
| || ||||||||| | ||||||||||| |
|
|
| T |
26391677 |
gaaatatgcaaatggaaattatctgcaat |
26391705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 51976500 - 51976445
Alignment:
| Q |
4 |
catattcagagagtcggaaaaggaggcatcaatattacatttgtacctaccatata |
59 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51976500 |
catattcagagagtcagaaaaggaggcatcaatattacatttgtacctaccatata |
51976445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 203 - 791
Target Start/End: Complemental strand, 34905115 - 34904530
Alignment:
| Q |
203 |
gtttcattttgttgttgccacaatttgaaattcctgcgcttccacaagctccacatgatcgtcacaaacaattctttttgcgcagaaggcagctggtcaa |
302 |
Q |
| |
|
|||| ||||||||| ||||| ||||| || ||| ||| |||||||| || ||||||||||| ||||||||||||||| | || | || ||| ||||||| |
|
|
| T |
34905115 |
gttttattttgttgctgccataattttaagttcatgcttttccacaaacttcacatgatcgttacaaacaattcttttcgagccggagacagttggtcaa |
34905016 |
T |
|
| Q |
303 |
gaagagaaaatatcaaagcatccatgttataatttcgacggagagttctatcaataatatcccataaattaacctcccgccacgcttgcatcgcacctgg |
402 |
Q |
| |
|
|||||||||| || | ||||||||| ||||||||| ||| ||| |||| |||||| |||||||||| | |||||| | | | |||||||| || | ||| |
|
|
| T |
34905015 |
gaagagaaaacattagagcatccatattataattttgacagag-gttccatcaatcgtatcccataagtgaacctcacacgatgcttgcattgcgcttgg |
34904917 |
T |
|
| Q |
403 |
acattctaacaagacatgaatactatcttcataattagttccacacaagacacaattattaggacaatgaataccacgactacttaggcatgcacgtgta |
502 |
Q |
| |
|
|||||| ||||| |||||||| |||||||||||||| | ||||||| ||||||| |||||||||| | |||| |||||||||||||||||||| |
|
|
| T |
34904916 |
acattccaacaacacatgaatgttatcttcataattactatcacacaaaacacaatctataggacaatgtactccactgctacttaggcatgcacgtgtt |
34904817 |
T |
|
| Q |
503 |
ggcaaacagccccgacacacacgccaaacaaagtttcgaatcttgggaggaaccttaagcttccatatcgaactccacttccccggaacatgcaaatgag |
602 |
Q |
| |
|
|| || |||||||||||||| |||| ||||| |||| |||| ||||||| ||||| ||||||| || | ||||| | |||| | |||||| || | |
|
|
| T |
34904816 |
gggaagcagccccgacacac--gccacacaaaatttctaatcatgggaggtaccttgagcttcctggtcagattccacctagccgggatatgcaagtggg |
34904719 |
T |
|
| Q |
603 |
agttatctgcaatttctgtaatacaaattcgatatgcactacgaacagaataactaccatttttctcagtcttccaaataattttatcttcatgaacaag |
702 |
Q |
| |
|
| |||||||||||||| || | |||||| ||||||||||||| |||||||||| ||||||||||||||| ||||||| | | |||||||||||||||||| |
|
|
| T |
34904718 |
atttatctgcaatttcggttacacaaatacgatatgcactactaacagaataattaccatttttctcagccttccaagttaatttatcttcatgaacaag |
34904619 |
T |
|
| Q |
703 |
aggatggagaggagtattcaaaataagctgggaagtattatgatcaaacaaattagaaattaaagtagcattccaaacctttgtcgatg |
791 |
Q |
| |
|
||| || ||||||||||||||||||||||||| ||| ||||||| |||| ||||||||||| ||||| ||||||||||||||| |||| |
|
|
| T |
34904618 |
aggttgaagaggagtattcaaaataagctgggtagtgttatgattgaacatattagaaattagagtagtattccaaacctttgttgatg |
34904530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 170 - 337
Target Start/End: Original strand, 36779906 - 36780074
Alignment:
| Q |
170 |
aggtgtcgggcccgttcaacaacctgtagacatgtttcattttgttgttgccacaatttgaaattcctgcgcttccacaagctccacatgatcgtcac-a |
268 |
Q |
| |
|
|||||||| ||| ||||||||||||| | ||||| ||||| || ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
36779906 |
aggtgtcgagcctgttcaacaacctgcatacatgcttcatatttttgttgccacaattttaaattcctacgcttccacaagctccacatgatcgtcacaa |
36780005 |
T |
|
| Q |
269 |
aacaattctttttgcgcagaaggcagctggtcaagaagagaaaatatcaaagcatccatgttataattt |
337 |
Q |
| |
|
|| || ||||||||| ||||||||| |||| |||||| |||||||||||||||| || ||||||||| |
|
|
| T |
36780006 |
aataactctttttgcatagaaggcagatggtaaagaaggaaaaatatcaaagcatcgatattataattt |
36780074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 207 - 439
Target Start/End: Original strand, 12715420 - 12715652
Alignment:
| Q |
207 |
cattttgttgttgccacaatttgaaattcctgcgcttccacaagctccacatgatcgtcacaaacaattctttttgcgcagaaggcagctggtcaagaag |
306 |
Q |
| |
|
|||||||||| ||||||| ||| || ||| ||||||| ||||| |||||||| ||||| ||||||| ||| |||| || || || | |||| |||||| |
|
|
| T |
12715420 |
cattttgttgctgccacagtttcaagttcatgcgctttcacaaactccacataatcgtgacaaacagttcactttgggccgagggtaattggtgaagaag |
12715519 |
T |
|
| Q |
307 |
agaaaatatcaaagcatccatgttataatttcgacggagagttctatcaataatatcccataaattaacctcccgccacgcttgcatcgcacctggacat |
406 |
Q |
| |
|
||||||||||| |||||||| ||||||||| || |||||||||||||| | |||||||||| ||| | | ||| ||||| || ||| ||||||| |
|
|
| T |
12715520 |
ggaaaatatcaaggcatccatattataatttttgcgaagagttctatcaattgtgtcccataaatgaacaacacaccaagcttgaataacacatggacat |
12715619 |
T |
|
| Q |
407 |
tctaacaagacatgaatactatcttcataatta |
439 |
Q |
| |
|
|| ||||| ||| ||| |||||||||||||| |
|
|
| T |
12715620 |
tccaacaacacacaaatgttatcttcataatta |
12715652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 207 - 439
Target Start/End: Original strand, 12776651 - 12776883
Alignment:
| Q |
207 |
cattttgttgttgccacaatttgaaattcctgcgcttccacaagctccacatgatcgtcacaaacaattctttttgcgcagaaggcagctggtcaagaag |
306 |
Q |
| |
|
|||||||||| ||||||| ||| || ||| ||||||| ||||| |||||||| ||||| ||||||| ||| |||| || || || | |||| |||||| |
|
|
| T |
12776651 |
cattttgttgctgccacagtttcaagttcatgcgctttcacaaactccacataatcgtgacaaacagttcactttgggccgagggtaattggtgaagaag |
12776750 |
T |
|
| Q |
307 |
agaaaatatcaaagcatccatgttataatttcgacggagagttctatcaataatatcccataaattaacctcccgccacgcttgcatcgcacctggacat |
406 |
Q |
| |
|
||||||||||| |||||||| ||||||||| || |||||||||||||| | |||||||||| ||| | | ||| ||||| || ||| ||||||| |
|
|
| T |
12776751 |
ggaaaatatcaaggcatccatattataatttttgcgaagagttctatcaattgtgtcccataaatgaacaacacaccaagcttgaataacacatggacat |
12776850 |
T |
|
| Q |
407 |
tctaacaagacatgaatactatcttcataatta |
439 |
Q |
| |
|
|| ||||| ||| ||| |||||||||||||| |
|
|
| T |
12776851 |
tccaacaacacacaaatgttatcttcataatta |
12776883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 36779768 - 36779879
Alignment:
| Q |
1 |
taccatattcagagagtcggaaaaggaggcatcaatattacatttgtacctaccatatatcggcttcgtccacttgatgacaagagcatgaataacacta |
100 |
Q |
| |
|
|||||||||||||||||| |||| || ||| ||||||||||||||||||| ||||| ||||||||||||||| | |||| || ||||||||||| | |
|
|
| T |
36779768 |
taccatattcagagagtcataaaaaaagccatgaatattacatttgtacctatcatatgtcggcttcgtccactcaaagacatgaccatgaataacattg |
36779867 |
T |
|
| Q |
101 |
ttcggctgagca |
112 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
36779868 |
ttcgactgagca |
36779879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 625 - 729
Target Start/End: Complemental strand, 33353 - 33249
Alignment:
| Q |
625 |
acaaattcgatatgcactacgaacagaataactaccatttttctcagtcttccaaataattttatcttcatgaacaagaggatggagaggagtattcaaa |
724 |
Q |
| |
|
||||||||||||||||| || ||| ||||| |||||| || | || |||||| || | |||||||||| ||| ||||| |||||||||||||||| | |
|
|
| T |
33353 |
acaaattcgatatgcaccgcgtacaaaataattaccatgctttttagccttccatatcaatttatcttcacaaaccagaggttggagaggagtattcaga |
33254 |
T |
|
| Q |
725 |
ataag |
729 |
Q |
| |
|
||||| |
|
|
| T |
33253 |
ataag |
33249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 206 - 276
Target Start/End: Complemental strand, 34060 - 33990
Alignment:
| Q |
206 |
tcattttgttgttgccacaatttgaaattcctgcgcttccacaagctccacatgatcgtcacaaacaattc |
276 |
Q |
| |
|
|||||||||| |||||||| ||| ||| | |||||||||||||| |||||||| || || | ||||||||| |
|
|
| T |
34060 |
tcattttgttattgccacagtttcaaacttctgcgcttccacaaactccacataattgtaataaacaattc |
33990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 78; Significance: 7e-36; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 206 - 522
Target Start/End: Complemental strand, 88847 - 88530
Alignment:
| Q |
206 |
tcattttgttgttgccacaatttgaaattcctgcgcttccacaagctccacatgatcgtcacaaacaattctttttgcgcagaaggcagctggtcaagaa |
305 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||| || ||| |||| ||||| |||| |||| | |||| | || || | || | | || |
|
|
| T |
88847 |
tcattttgttgttgccacaattttaaattcctacgcttccataaactcgacataatcgtaacaaccaatacactttggactgatggtaattgatggataa |
88748 |
T |
|
| Q |
306 |
gagaaaata-tcaaagcatccatgttataatttcgacggagagttctatcaataatatcccataaattaacctcccgccacgcttgcatcgcacctggac |
404 |
Q |
| |
|
||||||| | ||| ||||||||| ||||||||| | |||||||||||||||| |||||||||| | || || || || ||||| ||||| ||||||| |
|
|
| T |
88747 |
gagaaaaaaatcagagcatccatattataattttggcggagagttctatcaaccgtatcccataactatacatcacgtcaagcttgaatcgcccctggac |
88648 |
T |
|
| Q |
405 |
attctaacaagacatgaatactatcttcataattagttccacacaagacacaattattaggacaatgaataccacgactacttaggcatgcacgtgtagg |
504 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||| | ||||| | ||||||| | | ||||||||| || |||||||| |||| |||||| || || |
|
|
| T |
88647 |
attccaacaacacatgaatactatcttcataattactaccacaaagaacacaatcaatcagacaatgaactcctcgactactaaggcgtgcacgcgtggg |
88548 |
T |
|
| Q |
505 |
caaacagccccgacacac |
522 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
88547 |
aaaacagccccgacacac |
88530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 24542956 - 24542875
Alignment:
| Q |
1 |
taccatattcagagagtcggaaaaggaggcatcaatattacatttgtacctaccatatatcggcttcgtccacttgatgaca |
82 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| || ||||||||||| ||||||| |
|
|
| T |
24542956 |
taccatattcagagagtcagaaaaggaggcatcaatattacatttgtatctaccatataccgacttcgtccactcgatgaca |
24542875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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