View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8732_4 (Length: 800)

Name: NF8732_4
Description: NF8732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8732_4
NF8732_4
[»] chr8 (2 HSPs)
chr8 (19-770)||(25010967-25011720)
chr8 (472-511)||(4752802-4752841)


Alignment Details
Target: chr8 (Bit Score: 702; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 19 - 770
Target Start/End: Complemental strand, 25011720 - 25010967
Alignment:
Q  19 tgagatgga-catcatcaagatgcacacaggcagaggatcgttgactggatcagtgctgctggtggtactgcaggtgcatttgatgttacaaccaaaggg 117  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25011720 tgagatggatcataatcaagatgcacacaggcagaggatcgttgactggatcagtgctgctggtggtactgcaggtgcatttgatgttacaaccaaaggg 25011621  T
Q  118 attcttcactctgtgagtactcaacttgacggtttcaataatttctcttcaaacttactcttcaatcctgtggaattcttcgaatagtgtatagcactta 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25011620 attcttcactctgtgagtactcaacttgacggtttcaataatttctcttcaaacttactcttcaatcctgtggaattcttcgaatagtgtatagcacttt 25011521  T
Q  218 cacgaaacgataatttgacaaagcaacgtgttt-cagatatactagtttcaccagcttagtggaatttgtttacaatctttttgtagcaagacaacaatc 316  Q
      ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25011520 ttcgaaacgataatttgacaaagcaacgtgttttcagatatactagtttcaccagcttagtggaatttgtttacaatctttttgtagcaagacaacaatc 25011421  T
Q  317 tactatgtttcttgagcttttgttttttccccaataacagtgaagttacaatgacgatgcttctagtgaaagaattggatttggtgcagtcacaaatttc 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25011420 tactatgtttcttgagcttttgttttttccccaataacagtgaagttacaatgacgatgcttctagtgaaagaattggatttggtgcagtcacaaatttc 25011321  T
Q  417 atgtattcacacagtcagcacattagtgatggttggatcgtgattagactgtcatgagttcaaatcctatatgggacaattgtaaaatgatcattagtgc 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25011320 atgtattcacacagtcagcacattagtgatggttggatcgtgattagactgtcatgagttcaaatcctatatggaacaattgtaaaatgatcattagtgc 25011221  T
Q  517 taacctttattaatagtaataatttcaaatttgtttttaaactgaaactcaccgcacctctctaaggatacttaaaaatgagcagacagaagtttacgct 616  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25011220 taacctttattaataataataatttcaaatttgtttttaaactgaaactcaccgcacctctctaaggatacttaaaaatgagcagacagaagtttacgct 25011121  T
Q  617 gttaccatttttgctttttactagacaagtctgtttattctgcaactgactagatgatatttcatttgaatttggctcctttgtaggcgttggaaagatg 716  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25011120 gttaccatttttgctttttactagacaagtctgtttattttgcaactgactagatgacatttcatttgaatttggctcctttgtaggcgttggaaagatg 25011021  T
Q  717 tgagtattggcgcttgtcggatcagcagggaaaaccccctggcgttatgggatg 770  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25011020 tgagtattggcgcttgtcggatcagcagggaaaaccccctggtgttatgggatg 25010967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 472 - 511
Target Start/End: Complemental strand, 4752841 - 4752802
Alignment:
Q  472 gagttcaaatcctatatgggacaattgtaaaatgatcatt 511  Q
    ||||||||||||||||||| ||| ||||||||||||||||    
T  4752841 gagttcaaatcctatatggaacagttgtaaaatgatcatt 4752802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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