View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8732_5 (Length: 675)

Name: NF8732_5
Description: NF8732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8732_5
NF8732_5
[»] chr6 (3 HSPs)
chr6 (11-650)||(14823727-14824357)
chr6 (38-152)||(17452614-17452728)
chr6 (488-521)||(13480867-13480900)
[»] chr1 (2 HSPs)
chr1 (38-152)||(24433565-24433679)
chr1 (488-521)||(11910066-11910099)
[»] chr2 (1 HSPs)
chr2 (493-521)||(21135034-21135062)


Alignment Details
Target: chr6 (Bit Score: 458; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 11 - 650
Target Start/End: Complemental strand, 14824357 - 14823727
Alignment:
Q  11 cagagatagtataacgttgttttaaata-tcccatacctctttggcattctcaaaacgcccaaattgcagatggatactcggcgttgaggtcttgcgaca 109  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14824357 cagagatagtataacgttgttttaaataatcccatacctctttggcattctcaaaacgcccaaattgcagatggatactcggagttgaggtcttgcgaca 14824258  T
Q  110 ccaagtaatgatttgatggttcttgctatcccattcctctaataatttctcagcaaggcttcttgatcctcattagcacctatcgttggacactttttat 209  Q
    |||||||||||||||||||||||||||||||||||||||||||   ||||| |||||||||                    |||||||||||||||||||    
T  14824257 ccaagtaatgatttgatggttcttgctatcccattcctctaat---ttctcggcaaggctt--------------------atcgttggacactttttat 14824181  T
Q  210 cacccgtcacgtatcgccagagtcgtcgatctttcaggaacccacacattgcttcaggccattgattataattagagccattgagagttatggtaatagg 309  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14824180 cacccgtcacgtatcgccagagtcgtcgacctttcaggaacccacacattgcttcaggccattgattataattagagccattgagagttatggtaatagg 14824081  T
Q  310 aatagtaacgtgagatttctccattataattcaaagaattaaatagagacaaacagcgctgtgtcggttggtaa-aaaacttgtattaaactagaaggat 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14824080 aatagtaacgtgagatttctccattataattcaaagaattaaatagagacaaacagcgctgtgtcggttggtaaaaaaacttgtattaaactagaaggat 14823981  T
Q  409 ctcacccaccaatataagagacacataatatttggtggaatggttttgatgcagtgattggtttgtgagatatgagtaaataacccg------------c 496  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||            |    
T  14823980 ctcacccaccaatataagggacacataatatttggtggaatggttttgatgcactgattggtttgtgagatatgagtaaataacccgcaggaaattccac 14823881  T
Q  497 aggaaaatcgagagtttctagtagtaaaaggaaaacctaagctattgataccttgtagaagctcagaaagaaattgaaagagttgtattttatgtgtata 596  Q
    ||||||||||||||||||||| ||| |||||||||| |||||| |||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||    
T  14823880 aggaaaatcgagagtttctagcagtgaaaggaaaacgtaagctcttgataccatgtagaaactcagaaagatattgaaagagttgtattttatgtgtata 14823781  T
Q  597 tcaaatacaaggaagacctcttatttatattataggataggagacaaagaaaat 650  Q
    |||||||||| ||||| ||| |||||||||||||||||||||||||||||||||    
T  14823780 tcaaatacaatgaagagctcctatttatattataggataggagacaaagaaaat 14823727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 38 - 152
Target Start/End: Original strand, 17452614 - 17452728
Alignment:
Q  38 atcccatacctctttggcattctcaaaacgcccaaattgcagatggatactcggcgttgaggtcttgcgacaccaagtaatgatttgatggttcttgcta 137  Q
    ||||||||||||||| || |||||||||||||||||||||| ||| ||||| ||  | ||||| |||||| |||| ||||| ||||||||||||||||||    
T  17452614 atcccatacctcttttgcgttctcaaaacgcccaaattgcatatgaatactaggaatggaggtgttgcgaaaccaggtaataatttgatggttcttgcta 17452713  T
Q  138 tcccattcctctaat 152  Q
    |||||||||||||||    
T  17452714 tcccattcctctaat 17452728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 521
Target Start/End: Original strand, 13480867 - 13480900
Alignment:
Q  488 ataacccgcaggaaaatcgagagtttctagtagt 521  Q
    |||| |||||||||||||||||||||||||||||    
T  13480867 ataatccgcaggaaaatcgagagtttctagtagt 13480900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 38 - 152
Target Start/End: Original strand, 24433565 - 24433679
Alignment:
Q  38 atcccatacctctttggcattctcaaaacgcccaaattgcagatggatactcggcgttgaggtcttgcgacaccaagtaatgatttgatggttcttgcta 137  Q
    ||||||||||||||| || |||||||||||||||||||||| ||| ||||| ||  | ||||| |||||| |||| ||||| ||||||||||||||||||    
T  24433565 atcccatacctcttttgcgttctcaaaacgcccaaattgcatatgaatactaggaatggaggtgttgcgaaaccaggtaataatttgatggttcttgcta 24433664  T
Q  138 tcccattcctctaat 152  Q
    |||||||||||||||    
T  24433665 tcccattcctctaat 24433679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 521
Target Start/End: Complemental strand, 11910099 - 11910066
Alignment:
Q  488 ataacccgcaggaaaatcgagagtttctagtagt 521  Q
    |||||||||||||||||||||| |||||||||||    
T  11910099 ataacccgcaggaaaatcgagactttctagtagt 11910066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 493 - 521
Target Start/End: Original strand, 21135034 - 21135062
Alignment:
Q  493 ccgcaggaaaatcgagagtttctagtagt 521  Q
    |||||||||||||||||||||||||||||    
T  21135034 ccgcaggaaaatcgagagtttctagtagt 21135062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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