View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8732_7 (Length: 459)

Name: NF8732_7
Description: NF8732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8732_7
NF8732_7
[»] chr7 (4 HSPs)
chr7 (100-433)||(42637062-42637395)
chr7 (311-376)||(42635827-42635893)
chr7 (386-437)||(10661714-10661764)
chr7 (386-423)||(24814913-24814950)
[»] chr8 (3 HSPs)
chr8 (386-437)||(9997348-9997399)
chr8 (386-423)||(23867578-23867615)
chr8 (386-423)||(24849467-24849504)
[»] chr4 (3 HSPs)
chr4 (386-437)||(9069796-9069847)
chr4 (386-423)||(33746740-33746777)
chr4 (386-423)||(21479219-21479256)
[»] chr3 (6 HSPs)
chr3 (386-437)||(6578805-6578856)
chr3 (386-423)||(17042062-17042099)
chr3 (386-423)||(214397-214434)
chr3 (386-423)||(11657116-11657153)
chr3 (386-423)||(15674140-15674177)
chr3 (386-423)||(31650504-31650541)
[»] chr2 (2 HSPs)
chr2 (386-423)||(24311155-24311192)
chr2 (386-423)||(36397795-36397832)
[»] chr6 (2 HSPs)
chr6 (385-423)||(24542474-24542512)
chr6 (386-423)||(28622911-28622948)
[»] chr1 (3 HSPs)
chr1 (386-423)||(8282740-8282777)
chr1 (386-423)||(12753880-12753917)
chr1 (386-423)||(22347928-22347965)
[»] scaffold1001 (1 HSPs)
scaffold1001 (386-422)||(829-865)
[»] scaffold0008 (1 HSPs)
scaffold0008 (386-422)||(36378-36414)


Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 100 - 433
Target Start/End: Complemental strand, 42637395 - 42637062
Alignment:
Q  100 gttagataataatcagtggtgaactttgttgcgagttcaatcccaaagcaatgttagttttctttttctttattttcctatttcaataataacaaagtaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  42637395 gttagataataatcagtggtgaactttgttgcgagttcaatcccaaagcaatgttggttttctttttctttattttcctattgcaataataacaaagtaa 42637296  T
Q  200 gacattattataggtattggcatcgattgaaaagatatatgttggagatgtctcatagcatttagaattgtaaagaaaggaggccaagactataatgtga 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42637295 gacattattataggtattggcatcgattgaaaagatatatgttggagatgtctcgtagcatttagaattgtaaagaaaggaggccaagactataatgtga 42637196  T
Q  300 gttttagttcttttttccaacttcattagtcataaacacattaagcttgtatttgaattattttctcttttcttatgtgttgggtatatttgagtattgg 399  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42637195 gttttagttcttttttcgaacttcattagtcataaacacattaagtttgtatttgaatttttttctcttttcttatgtgttgggtatatttgagtattgg 42637096  T
Q  400 cttcattgttgctaaaataaataccaatgtttgt 433  Q
    ||| ||||||||||||| ||||||| ||||||||    
T  42637095 ctttattgttgctaaaacaaatacccatgtttgt 42637062  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 311 - 376
Target Start/End: Complemental strand, 42635893 - 42635827
Alignment:
Q  311 tttttccaacttcattagtcataaacacattaagcttgtatttgaa-ttattttctcttttcttatg 376  Q
    |||||| |||||||||||||||||||||||||||||||||||| || || |||||||||||||||||    
T  42635893 tttttcgaacttcattagtcataaacacattaagcttgtatttaaattttttttctcttttcttatg 42635827  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 437
Target Start/End: Complemental strand, 10661764 - 10661714
Alignment:
Q  386 tatttgagtattggcttcattgttgctaaaataaataccaatgtttgtgatg 437  Q
    |||||||||||||||||| |||||||||||| ||||||| || |||||||||    
T  10661764 tatttgagtattggcttcgttgttgctaaaacaaatacccat-tttgtgatg 10661714  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 423
Target Start/End: Complemental strand, 24814950 - 24814913
Alignment:
Q  386 tatttgagtattggcttcattgttgctaaaataaatac 423  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  24814950 tattttagtattggcttcattgttgctaaaacaaatac 24814913  T

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Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 386 - 437
Target Start/End: Complemental strand, 9997399 - 9997348
Alignment:
Q  386 tatttgagtattggcttcattgttgctaaaataaataccaatgtttgtgatg 437  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  9997399 tatttgagtattggcttcattgttgctaaaacaaatacccatgtttgtgatg 9997348  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 423
Target Start/End: Original strand, 23867578 - 23867615
Alignment:
Q  386 tatttgagtattggcttcattgttgctaaaataaatac 423  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  23867578 tatttgagtattggcttcattgttgctaaaacaaatac 23867615  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 423
Target Start/End: Original strand, 24849467 - 24849504
Alignment:
Q  386 tatttgagtattggcttcattgttgctaaaataaatac 423  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  24849467 tatttgagtattgacttcattgttgctaaaacaaatac 24849504  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 437
Target Start/End: Complemental strand, 9069847 - 9069796
Alignment:
Q  386 tatttgagtattggcttcattgttgctaaaataaataccaatgtttgtgatg 437  Q
    ||||||||||||| ||||||||||||||||| ||||||| ||||||||||||    
T  9069847 tatttgagtattgacttcattgttgctaaaacaaatacccatgtttgtgatg 9069796  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 423
Target Start/End: Complemental strand, 33746777 - 33746740
Alignment:
Q  386 tatttgagtattggcttcattgttgctaaaataaatac 423  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  33746777 tatttgagtattggcttcattgttgctaaaacaaatac 33746740  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 423
Target Start/End: Complemental strand, 21479256 - 21479219
Alignment:
Q  386 tatttgagtattggcttcattgttgctaaaataaatac 423  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  21479256 tatttgagtattggcttcattgttgttaaaacaaatac 21479219  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 437
Target Start/End: Original strand, 6578805 - 6578856
Alignment:
Q  386 tatttgagtattggcttcattgttgctaaaataaataccaatgtttgtgatg 437  Q
    ||||||||||||||||||||||||||||||| ||||||  ||||||||||||    
T  6578805 tatttgagtattggcttcattgttgctaaaacaaatactcatgtttgtgatg 6578856  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 423
Target Start/End: Original strand, 17042062 - 17042099
Alignment:
Q  386 tatttgagtattggcttcattgttgctaaaataaatac 423  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  17042062 tatttgagtattggcttcattgttgctaaaacaaatac 17042099  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 423
Target Start/End: Original strand, 214397 - 214434
Alignment:
Q  386 tatttgagtattggcttcattgttgctaaaataaatac 423  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  214397 tatttgagtattgacttcattgttgctaaaacaaatac 214434  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 423
Target Start/End: Complemental strand, 11657153 - 11657116
Alignment:
Q  386 tatttgagtattggcttcattgttgctaaaataaatac 423  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  11657153 tatttgggtattagcttcattgttgctaaaataaatac 11657116  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 423
Target Start/End: Original strand, 15674140 - 15674177
Alignment:
Q  386 tatttgagtattggcttcattgttgctaaaataaatac 423  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  15674140 tatttgagtattgacttcattgttgctaaaacaaatac 15674177  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 423
Target Start/End: Complemental strand, 31650541 - 31650504
Alignment:
Q  386 tatttgagtattggcttcattgttgctaaaataaatac 423  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  31650541 tatttgagtattggcttcattgttgcaaaaacaaatac 31650504  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 423
Target Start/End: Original strand, 24311155 - 24311192
Alignment:
Q  386 tatttgagtattggcttcattgttgctaaaataaatac 423  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  24311155 tatttgagtattggcttcattgttgctaaaacaaatac 24311192  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 423
Target Start/End: Original strand, 36397795 - 36397832
Alignment:
Q  386 tatttgagtattggcttcattgttgctaaaataaatac 423  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  36397795 tatttgggtattggcttcattgttgctaaaacaaatac 36397832  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 423
Target Start/End: Complemental strand, 24542512 - 24542474
Alignment:
Q  385 atatttgagtattggcttcattgttgctaaaataaatac 423  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  24542512 atatttgagtattgacttcattgttgctaaaacaaatac 24542474  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 423
Target Start/End: Original strand, 28622911 - 28622948
Alignment:
Q  386 tatttgagtattggcttcattgttgctaaaataaatac 423  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  28622911 tatttgagtattgacttcattgttgctaaaacaaatac 28622948  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 423
Target Start/End: Complemental strand, 8282777 - 8282740
Alignment:
Q  386 tatttgagtattggcttcattgttgctaaaataaatac 423  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  8282777 tatttgagtattggcctcattgttgctaaaacaaatac 8282740  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 423
Target Start/End: Complemental strand, 12753917 - 12753880
Alignment:
Q  386 tatttgagtattggcttcattgttgctaaaataaatac 423  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  12753917 tatttgagtgttggcttcattgttgctaaaacaaatac 12753880  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 423
Target Start/End: Original strand, 22347928 - 22347965
Alignment:
Q  386 tatttgagtattggcttcattgttgctaaaataaatac 423  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  22347928 tatttgggtattggcttcattgttgctaaaacaaatac 22347965  T

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Target: scaffold1001 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 422
Target Start/End: Complemental strand, 865 - 829
Alignment:
Q  386 tatttgagtattggcttcattgttgctaaaataaata 422  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  865 tatttgagtattgtcttcattgttgctaaaacaaata 829  T

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Target: scaffold0008 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 422
Target Start/End: Complemental strand, 36414 - 36378
Alignment:
Q  386 tatttgagtattggcttcattgttgctaaaataaata 422  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  36414 tatttgagtattgacttcattgttgctaaaaaaaata 36378  T

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