View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8732_8 (Length: 457)
Name: NF8732_8
Description: NF8732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8732_8 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 30 - 437
Target Start/End: Original strand, 44017054 - 44017455
Alignment:
| Q |
30 |
attacttgtatctttgttatgctaaaaaagagtaagcaaaagaacaaagaggtaacactaatattttccatttttgattgtgaaaatggtggctttactt |
129 |
Q |
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| T |
44017054 |
attacttgtatctttgttatgctaaaaaagagtaagcaaaagaacaaagaggtaacactaatattttccatttttgattgtgaaaatggtgactttactt |
44017153 |
T |
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| Q |
130 |
ggagtcggagattaatgtagaagatgagggtgaaggtgaaggtgaaggtaataaaagactactagtttaggagagcacatgcatgatgcttaagtttcac |
229 |
Q |
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| T |
44017154 |
ggagttggagattaatgtagaagatgagggtg------aaggtgaaggtgataaaagactactagtttaggagagcacatgcatgatgcttaagtttcac |
44017247 |
T |
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| Q |
230 |
acaaacgttttaaacaaaagcatgtgaaacaaaaagagatagtgtcaagtagtatgtttaagaagggagataatagagatgagagaatggtcaaaaagga |
329 |
Q |
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| T |
44017248 |
acaaacgttttaaacacaagcatgtgaaacaaaaagagatagtgtcaagtagtatgtttaagaagggagataatagagatgagagaatggtcaaaaagga |
44017347 |
T |
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| Q |
330 |
atggacaaagctttctatttgttatcttagacatataccagaatgtaccttaactatctttgtctctgctactaaatgatagagccaaaaccaaccttgt |
429 |
Q |
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| T |
44017348 |
atggacaaagctttctatttgttatcttagacatataccagaatgtaccttaactatctttgtctctgctactaaatgatagagccaaaaccaaccttgt |
44017447 |
T |
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| Q |
430 |
gatgatgt |
437 |
Q |
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| T |
44017448 |
gatgatgt |
44017455 |
T |
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Back To:
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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 331
Target Start/End: Complemental strand, 31037218 - 31037093
Alignment:
| Q |
211 |
catgatgcttaagtttcacacaaacgttttaaacaaaagcatgtgaaacaaaaagagatagtgtcaagta---gtatgtttaagaagggagataatagag |
307 |
Q |
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||||||||||| |||||||||||| ||||| ||| || |||||| | ||| |||||| ||||||||| ||| |||||||||| ||| ||||||| |
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| T |
31037218 |
catgatgcttaggtttcacacaaatgttttcgacactagaatgtgacatgaaaggagatattgtcaagtattgttatctttaagaaggaagaaaatagag |
31037119 |
T |
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| Q |
308 |
at--gagagaatggtcaaaaaggaat |
331 |
Q |
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| T |
31037118 |
ctgagagagaatgttcaaaaaggaat |
31037093 |
T |
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