View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8732_low_1 (Length: 462)
Name: NF8732_low_1
Description: NF8732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8732_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 46 - 413
Target Start/End: Complemental strand, 35845 - 35478
Alignment:
| Q |
46 |
gagatgaacatacgagtttgaaaacaatgtgacaaattgtcatttttcaaaagaatagacatgaaaggagacaaaaagggacaagtgatttcaatcaagt |
145 |
Q |
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| T |
35845 |
gagatgaacatacgagtttgaaaacaatgtcacaaattgtcatttttcaaaagaatagacatgaaaggagacaaaaagggacaagtgatttcaatcaagt |
35746 |
T |
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| Q |
146 |
gataaaaggttataattaacaactttatatcctaggtgtatatcatatgggttgttatccaagtatgaaggtccttacaaaatacatataaaaactgaat |
245 |
Q |
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| T |
35745 |
gataaaaggttataattaacaactttatatcctaggtgtatatcatatgggttgttatccaagtatgaaggtccttacaaaatacatataaaaactgaat |
35646 |
T |
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| Q |
246 |
gaaagtagttgatgaataaagaaagaacgaaagaataatacttggtagaatccaacagagtttagcattaggctaaaattcatggcagtgatagacaaat |
345 |
Q |
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| T |
35645 |
gaaagtagttgatgaataaagaaagaacgaaagaaaaatacttggtagaatccaacagagtttagcattaggctaaaattcatggcagtgatagacaaat |
35546 |
T |
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| Q |
346 |
tggcgaccatagagaaccaaagaagctcccacatagggacatgctttgatgaagacgagtaaccggta |
413 |
Q |
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| T |
35545 |
tggcgaccatagagaaccaaagaagctcccacatagggacatgctttgatgaagacgagtaaccggta |
35478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 391
Target Start/End: Original strand, 8677160 - 8677268
Alignment:
| Q |
283 |
atacttggtagaatccaacagagtttagcattaggctaaaattcatggcagtgatagacaaattggcgaccatagagaaccaaagaagctcccacatagg |
382 |
Q |
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| T |
8677160 |
atacttggtagaatccaacggaattgagcatgaggctcaagttcatcccggtgatagatatattggcaacagcagagaaccaaataagctcccacaaagg |
8677259 |
T |
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| Q |
383 |
gacatgctt |
391 |
Q |
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| T |
8677260 |
aacatgctt |
8677268 |
T |
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