View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8733_low_1 (Length: 456)

Name: NF8733_low_1
Description: NF8733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8733_low_1
NF8733_low_1
[»] chr2 (7 HSPs)
chr2 (18-443)||(1436671-1437111)
chr2 (171-443)||(1430505-1430793)
chr2 (312-443)||(1456830-1456961)
chr2 (171-315)||(1443467-1443609)
chr2 (375-443)||(1449631-1449699)
chr2 (334-443)||(1442224-1442328)
chr2 (244-308)||(1456983-1457045)


Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 443
Target Start/End: Complemental strand, 1437111 - 1436671
Alignment:
Q  18 cttctcaacatactaatctccattacattatgttcttcacccaaaaatttcatatgtggttgtttcaaatttctgcatttttgtttccaatctcaaaatt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  1437111 cttctcaacatactaatctccattacattatgttcttcacccaaaaatttcat--gtggttgtttcaaatttctgcatttttgtttccaatctcaaaatt 1437014  T
Q  118 tgagagattttcgtatgtagatgtatctgttataaaattgcatatattttcataaagtgttggttgtttgtgtcctaagctttatcctgcaacttgacaa 217  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1437013 tgagagattttcatatgtagatgtatctgttataaaattgcatatattttcataaagtgttggttgtttgtgtcctaagctttatcctgcaacttgacaa 1436914  T
Q  218 cccaataaaaattccaaacattttcgtaaataatcataacctgatcaatgacaccatgtaacgtgaagatacaagataatttcaagaagatcaa------ 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||          
T  1436913 cccaataaaaattccaaacattttcgtaaataatcataacctgatcaatgaccccatgtaacgtgaagatacaagataatttcaagaagatcaaaagaaa 1436814  T
Q  312 -----------aagagatggtgaaaagcatatccacaaatcatgaaagtttatctctttcaggcagaggaagaaggattgtgtattcactagtggatatg 400  Q
               |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1436813 agatcaagtagaagaaatggtgaaaagcatatccacaaatcatgaaagtttatctctttcaggcagaggaagaaggattgtgtattcactagtggatatg 1436714  T
Q  401 atagaatcttcaaacggatcgtctaggaccttagagttcatct 443  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1436713 atagaatcttcaaacggatcgtctaggaccttagagttcatct 1436671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 171 - 443
Target Start/End: Complemental strand, 1430793 - 1430505
Alignment:
Q  171 aaagtgttggttgtttgtgtcctaagctttatcctgcaacttgacaacccaataaaaattccaaacatttt-cgtaaataatcataacctgatcaatgac 269  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||| ||||| |||| | ||||||||||||||||||||||||||    
T  1430793 aaagtgttggttgcttgtgtcctaagctttatcctgcaacttgacaacccagtaacaattacaaacttttttcttaaataatcataacctgatcaatgac 1430694  T
Q  270 accatgtaacgtgaagatacaagataatttcaagaagatcaaaaga-----------------gatggtgaaaagcatatccacaaatcatgaaagttta 352  Q
      |||||||||||||||||||||||||||||||||||||| |||||                 ||||||||||||||||| |||||||||||||||||||    
T  1430693 --catgtaacgtgaagatacaagataatttcaagaagatcgaaagaaaagattaagtagaagagatggtgaaaagcatatgcacaaatcatgaaagttta 1430596  T
Q  353 tctctttcaggcagaggaagaaggattgtgtattcactagtggatatgatagaatcttcaaacggatcgtctaggaccttagagttcatct 443  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  1430595 tctctttcaggcagaggaaaaaggattgtgtattcactagtggatatgatagaatcttcaaacggatcatctaggacctgagagttcatct 1430505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 312 - 443
Target Start/End: Complemental strand, 1456961 - 1456830
Alignment:
Q  312 aagagatggtgaaaagcatatccacaaatcatgaaagtttatctctttcaggcagaggaagaaggattgtgtattcactagtggatatgatagaatcttc 411  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  1456961 aagagatggtgaaaagcatctgcacaaatcatgaaagtttatctctttcaggcagaggaagaaggattgtgtattcactagtggatgtgacagaatcttc 1456862  T
Q  412 aaacggatcgtctaggaccttagagttcatct 443  Q
    ||||||||| |||||||||| | |||||||||    
T  1456861 aaacggatcatctaggacctgatagttcatct 1456830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 171 - 315
Target Start/End: Complemental strand, 1443609 - 1443467
Alignment:
Q  171 aaagtgttggttgtttgtgtcctaagctttatcctgcaacttgacaacccaataaaaattccaaacat-tttcgtaaataatcataacctgatcaatgac 269  Q
    ||||||||||||| |||||| |||  ||||||||||||||||||||||||||||||| || |||||   |||| |||| |||||||||||||||||||      
T  1443609 aaagtgttggttgcttgtgtgctacactttatcctgcaacttgacaacccaataaaa-ttacaaactgctttcttaaaaaatcataacctgatcaatgga 1443511  T
Q  270 accatgtaacgtgaagatacaagataatttcaagaagatcaaaaga 315  Q
      |||||||| |||| ||||||||||||||||||||||||||||||    
T  1443510 --catgtaacctgaacatacaagataatttcaagaagatcaaaaga 1443467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 375 - 443
Target Start/End: Complemental strand, 1449699 - 1449631
Alignment:
Q  375 ggattgtgtattcactagtggatatgatagaatcttcaaacggatcgtctaggaccttagagttcatct 443  Q
    |||||||||||| ||||||| ||||||||||||||||||| ||||| |||||||||  |||||||||||    
T  1449699 ggattgtgtattgactagtgaatatgatagaatcttcaaagggatcatctaggacccgagagttcatct 1449631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 443
Target Start/End: Complemental strand, 1442328 - 1442224
Alignment:
Q  334 cacaaatcatgaaagtttatctctttcaggcagaggaagaaggattgtgtattcactagtggatatgatagaatcttcaaacggatcgtctaggacctta 433  Q
    ||||||||||| | ||||||||| |||||||||||||||   ||||   |||||||| ||  |||||||||||| || ||| ||||| |||||||||| |    
T  1442328 cacaaatcatgta-gtttatctcgttcaggcagaggaag---gattacatattcacttgtccatatgatagaatgttaaaa-ggatcatctaggacctga 1442234  T
Q  434 gagttcatct 443  Q
    ||||||||||    
T  1442233 gagttcatct 1442224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 1457045 - 1456983
Alignment:
Q  244 taaataatcataacctgatcaatgacaccatgtaacgtgaagatacaagataatttcaagaagat 308  Q
    |||| |||||||||||||||||||    |||||||| |||| ||||| |||||||||||||||||    
T  1457045 taaaaaatcataacctgatcaatgga--catgtaacctgaacatacatgataatttcaagaagat 1456983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University